Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 8288 | 0.75 | 0.517177 |
Target: 5'- -cUCGUCauccgGACGaucgcgggccucgACUCGAAGUACCGCg -3' miRNA: 3'- gcAGCAG-----CUGCa------------UGAGCUUCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 31209 | 0.75 | 0.553481 |
Target: 5'- aCGUCGUCG-CGaacCUCGAGGUAC-GCa -3' miRNA: 3'- -GCAGCAGCuGCau-GAGCUUCAUGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 57414 | 0.72 | 0.685119 |
Target: 5'- aCGUCGcCGGCGaGCUCGAGGUggacaacaACCu- -3' miRNA: 3'- -GCAGCaGCUGCaUGAGCUUCA--------UGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 47895 | 0.72 | 0.706829 |
Target: 5'- -cUCGgcaacgCGACGgucGCUccgCGAGGUGCCGCg -3' miRNA: 3'- gcAGCa-----GCUGCa--UGA---GCUUCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 8817 | 0.72 | 0.706829 |
Target: 5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3' miRNA: 3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 18849 | 0.72 | 0.717579 |
Target: 5'- -cUCGUCGACGagcUGCUCG-AGUAC-GCa -3' miRNA: 3'- gcAGCAGCUGC---AUGAGCuUCAUGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 6341 | 0.71 | 0.749275 |
Target: 5'- aCGUCGgCGAUGUACgcgaCGAAGgGgCGCg -3' miRNA: 3'- -GCAGCaGCUGCAUGa---GCUUCaUgGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 49323 | 0.7 | 0.799557 |
Target: 5'- -cUCGUCGACaucGCccggUCGgcGUACCGCg -3' miRNA: 3'- gcAGCAGCUGca-UG----AGCuuCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 41366 | 0.7 | 0.798589 |
Target: 5'- uCGUCGUCGACGauUACgaacucucgaUCGAGGUagagggcgaggagGCCGg -3' miRNA: 3'- -GCAGCAGCUGC--AUG----------AGCUUCA-------------UGGCg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 48680 | 0.7 | 0.778894 |
Target: 5'- gGUCG-CGACGUGggagaucCUCGAA--GCCGCc -3' miRNA: 3'- gCAGCaGCUGCAU-------GAGCUUcaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 47384 | 0.71 | 0.769827 |
Target: 5'- gCGUCGUCGACGgcgaGCUCcAGGg--CGCg -3' miRNA: 3'- -GCAGCAGCUGCa---UGAGcUUCaugGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 43398 | 0.71 | 0.769827 |
Target: 5'- gGcCGUCGAC--GCUCGAcGaGCCGCa -3' miRNA: 3'- gCaGCAGCUGcaUGAGCUuCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30055 | 0.71 | 0.759616 |
Target: 5'- uCG-CGUCGuuGUGCcagccgUCGAGGcUGCCGCg -3' miRNA: 3'- -GCaGCAGCugCAUG------AGCUUC-AUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 58126 | 0.66 | 0.951067 |
Target: 5'- -cUCGUCGGCGg--UCGucGUcgaGCCGCc -3' miRNA: 3'- gcAGCAGCUGCaugAGCuuCA---UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 26014 | 0.66 | 0.953676 |
Target: 5'- -cUCGUCGACGggaccgaacgcggACUCGAucgagcGGaGCUGCu -3' miRNA: 3'- gcAGCAGCUGCa------------UGAGCU------UCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 18051 | 0.66 | 0.955362 |
Target: 5'- --aUGUCGGCGgcUUUGA--UGCCGCg -3' miRNA: 3'- gcaGCAGCUGCauGAGCUucAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 37050 | 0.66 | 0.959002 |
Target: 5'- gGUCGUCGAUGUcgAUguucucggugUCGAgguccuccucgucAGUACCGa -3' miRNA: 3'- gCAGCAGCUGCA--UG----------AGCU-------------UCAUGGCg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 33261 | 0.66 | 0.959394 |
Target: 5'- aCGUCGagGACGUcgucaGCUCGuucuucGAGUACUa- -3' miRNA: 3'- -GCAGCagCUGCA-----UGAGC------UUCAUGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 35422 | 0.66 | 0.959394 |
Target: 5'- uCGUCGUCGAUcucGCUCGcGAGgucgACCa- -3' miRNA: 3'- -GCAGCAGCUGca-UGAGC-UUCa---UGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 49559 | 1.13 | 0.002322 |
Target: 5'- cCGUCGUCGACGUACUCGAAGUACCGCu -3' miRNA: 3'- -GCAGCAGCUGCAUGAGCUUCAUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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