miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 53253 0.67 0.909488
Target:  5'- gGUCGUCGACGgcgACgagaucgggccgggCGAcGUccuggcgaccaGCCGCg -3'
miRNA:   3'- gCAGCAGCUGCa--UGa-------------GCUuCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48680 0.7 0.778894
Target:  5'- gGUCG-CGACGUGggagaucCUCGAA--GCCGCc -3'
miRNA:   3'- gCAGCaGCUGCAU-------GAGCUUcaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 41366 0.7 0.798589
Target:  5'- uCGUCGUCGACGauUACgaacucucgaUCGAGGUagagggcgaggagGCCGg -3'
miRNA:   3'- -GCAGCAGCUGC--AUG----------AGCUUCA-------------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 49323 0.7 0.799557
Target:  5'- -cUCGUCGACaucGCccggUCGgcGUACCGCg -3'
miRNA:   3'- gcAGCAGCUGca-UG----AGCuuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 29470 0.69 0.827705
Target:  5'- -cUCGUaGACGcGCUCGAGgGUGCgGCg -3'
miRNA:   3'- gcAGCAgCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 3176 0.69 0.853995
Target:  5'- aCGUCGUCGACGg---CGAGGa--CGUg -3'
miRNA:   3'- -GCAGCAGCUGCaugaGCUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 31350 0.68 0.87037
Target:  5'- uCGUCGUCGACG---UCG-AGcAUCGCg -3'
miRNA:   3'- -GCAGCAGCUGCaugAGCuUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 56280 0.68 0.87037
Target:  5'- aCGaCGUCGACcaccagguGUACuUCGAGG-ACUGCa -3'
miRNA:   3'- -GCaGCAGCUG--------CAUG-AGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 35358 0.68 0.885751
Target:  5'- gCGUCGcCGGCG-ACgaucgCGAAGUG-CGCc -3'
miRNA:   3'- -GCAGCaGCUGCaUGa----GCUUCAUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 47384 0.71 0.769827
Target:  5'- gCGUCGUCGACGgcgaGCUCcAGGg--CGCg -3'
miRNA:   3'- -GCAGCAGCUGCa---UGAGcUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 43398 0.71 0.769827
Target:  5'- gGcCGUCGAC--GCUCGAcGaGCCGCa -3'
miRNA:   3'- gCaGCAGCUGcaUGAGCUuCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 30055 0.71 0.759616
Target:  5'- uCG-CGUCGuuGUGCcagccgUCGAGGcUGCCGCg -3'
miRNA:   3'- -GCaGCAGCugCAUG------AGCUUC-AUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 45639 0.77 0.430254
Target:  5'- gGUCGUCGACGgcguCUCGGA-UGCCGa -3'
miRNA:   3'- gCAGCAGCUGCau--GAGCUUcAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 8288 0.75 0.517177
Target:  5'- -cUCGUCauccgGACGaucgcgggccucgACUCGAAGUACCGCg -3'
miRNA:   3'- gcAGCAG-----CUGCa------------UGAGCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 31209 0.75 0.553481
Target:  5'- aCGUCGUCG-CGaacCUCGAGGUAC-GCa -3'
miRNA:   3'- -GCAGCAGCuGCau-GAGCUUCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 57414 0.72 0.685119
Target:  5'- aCGUCGcCGGCGaGCUCGAGGUggacaacaACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGCUUCA--------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 47895 0.72 0.706829
Target:  5'- -cUCGgcaacgCGACGgucGCUccgCGAGGUGCCGCg -3'
miRNA:   3'- gcAGCa-----GCUGCa--UGA---GCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 8817 0.72 0.706829
Target:  5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 18849 0.72 0.717579
Target:  5'- -cUCGUCGACGagcUGCUCG-AGUAC-GCa -3'
miRNA:   3'- gcAGCAGCUGC---AUGAGCuUCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 6341 0.71 0.749275
Target:  5'- aCGUCGgCGAUGUACgcgaCGAAGgGgCGCg -3'
miRNA:   3'- -GCAGCaGCUGCAUGa---GCUUCaUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.