miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 36249 0.66 0.959394
Target:  5'- cCGg-GUCGACGUcCUCGAGuGcGCCGa -3'
miRNA:   3'- -GCagCAGCUGCAuGAGCUU-CaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 46419 0.67 0.931174
Target:  5'- aGUUGUUGACGUcgcuggggaACUCGucGAGUugacuccaguCCGCg -3'
miRNA:   3'- gCAGCAGCUGCA---------UGAGC--UUCAu---------GGCG- -5'
16265 3' -50.9 NC_004084.1 + 1190 0.67 0.92781
Target:  5'- gGUCGUgGACGUagucgcguaagcGgUCGAAGUccuucgagauguuggACUGCg -3'
miRNA:   3'- gCAGCAgCUGCA------------UgAGCUUCA---------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49559 1.13 0.002322
Target:  5'- cCGUCGUCGACGUACUCGAAGUACCGCu -3'
miRNA:   3'- -GCAGCAGCUGCAUGAGCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 18051 0.66 0.955362
Target:  5'- --aUGUCGGCGgcUUUGA--UGCCGCg -3'
miRNA:   3'- gcaGCAGCUGCauGAGCUucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 26014 0.66 0.953676
Target:  5'- -cUCGUCGACGggaccgaacgcggACUCGAucgagcGGaGCUGCu -3'
miRNA:   3'- gcAGCAGCUGCa------------UGAGCU------UCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 58075 0.66 0.941669
Target:  5'- -uUCGaCGGCGUugUCGuugccguccuGGUcGCCGCg -3'
miRNA:   3'- gcAGCaGCUGCAugAGCu---------UCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 41112 0.66 0.941669
Target:  5'- uCGUaaucUCGAUGUGCUCGccGccACCGCc -3'
miRNA:   3'- -GCAgc--AGCUGCAUGAGCuuCa-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 55980 0.66 0.93656
Target:  5'- -cUCGUCGACGg--UCGAuucACCGCc -3'
miRNA:   3'- gcAGCAGCUGCaugAGCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 6688 0.67 0.931174
Target:  5'- -cUCGaCGACGUccauCUCGAGGUcaacGCCGg -3'
miRNA:   3'- gcAGCaGCUGCAu---GAGCUUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 16532 0.66 0.93656
Target:  5'- gGUCGUCGugGaccucCUCGcAGU-UCGCg -3'
miRNA:   3'- gCAGCAGCugCau---GAGCuUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1145 0.66 0.941669
Target:  5'- gGUUGUaGACGaGCUCGGAG-ACCa- -3'
miRNA:   3'- gCAGCAgCUGCaUGAGCUUCaUGGcg -5'
16265 3' -50.9 NC_004084.1 + 35422 0.66 0.959394
Target:  5'- uCGUCGUCGAUcucGCUCGcGAGgucgACCa- -3'
miRNA:   3'- -GCAGCAGCUGca-UGAGC-UUCa---UGGcg -5'
16265 3' -50.9 NC_004084.1 + 13135 0.66 0.936034
Target:  5'- gGcCGUCGuCGUACUCGAccuccuucgGGUACacacagaUGCg -3'
miRNA:   3'- gCaGCAGCuGCAUGAGCU---------UCAUG-------GCG- -5'
16265 3' -50.9 NC_004084.1 + 33261 0.66 0.959394
Target:  5'- aCGUCGagGACGUcgucaGCUCGuucuucGAGUACUa- -3'
miRNA:   3'- -GCAGCagCUGCA-----UGAGC------UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 35139 0.66 0.941669
Target:  5'- uGggCGUCGAgGUcCUCGggGUACa-- -3'
miRNA:   3'- gCa-GCAGCUgCAuGAGCuuCAUGgcg -5'
16265 3' -50.9 NC_004084.1 + 21111 0.67 0.931174
Target:  5'- gCGUCGUCGAUGaGgUCGAAcGUgGCCu- -3'
miRNA:   3'- -GCAGCAGCUGCaUgAGCUU-CA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 3920 0.67 0.931174
Target:  5'- aGUCGUCGaagGCGUcCUCGAaccggcuuuugaAGUGCaggguCGCg -3'
miRNA:   3'- gCAGCAGC---UGCAuGAGCU------------UCAUG-----GCG- -5'
16265 3' -50.9 NC_004084.1 + 37050 0.66 0.959002
Target:  5'- gGUCGUCGAUGUcgAUguucucggugUCGAgguccuccucgucAGUACCGa -3'
miRNA:   3'- gCAGCAGCUGCA--UG----------AGCU-------------UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 58126 0.66 0.951067
Target:  5'- -cUCGUCGGCGg--UCGucGUcgaGCCGCc -3'
miRNA:   3'- gcAGCAGCUGCaugAGCuuCA---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.