miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 343 0.71 0.738814
Target:  5'- uCGUCGUUGAgccaggUGgccuCUCGAAacuGUGCCGCg -3'
miRNA:   3'- -GCAGCAGCU------GCau--GAGCUU---CAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 580 0.76 0.469679
Target:  5'- uGUCGUCGAUGUGCUCuucGGUGaggaCGCc -3'
miRNA:   3'- gCAGCAGCUGCAUGAGcu-UCAUg---GCG- -5'
16265 3' -50.9 NC_004084.1 + 686 0.82 0.233394
Target:  5'- -uUCGUCGACGUcCUCGAgcGGUGCaCGCa -3'
miRNA:   3'- gcAGCAGCUGCAuGAGCU--UCAUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 873 0.78 0.357606
Target:  5'- aGUCGUCGACGUcGCcgUCGGaaucGGUAUCGCu -3'
miRNA:   3'- gCAGCAGCUGCA-UG--AGCU----UCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 905 0.7 0.779894
Target:  5'- --cUGUCGGCGUcgUCGGAGUucGCUGCg -3'
miRNA:   3'- gcaGCAGCUGCAugAGCUUCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1145 0.66 0.941669
Target:  5'- gGUUGUaGACGaGCUCGGAG-ACCa- -3'
miRNA:   3'- gCAGCAgCUGCaUGAGCUUCaUGGcg -5'
16265 3' -50.9 NC_004084.1 + 1190 0.67 0.92781
Target:  5'- gGUCGUgGACGUagucgcguaagcGgUCGAAGUccuucgagauguuggACUGCg -3'
miRNA:   3'- gCAGCAgCUGCA------------UgAGCUUCA---------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1484 0.67 0.91957
Target:  5'- gCGcCGaCGACG-ACUaCGAAGU-CCGCc -3'
miRNA:   3'- -GCaGCaGCUGCaUGA-GCUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1979 0.67 0.925511
Target:  5'- cCGUCGagaUCGuCGUuC-CGAcGGUGCCGCu -3'
miRNA:   3'- -GCAGC---AGCuGCAuGaGCU-UCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 2147 0.67 0.913351
Target:  5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3'
miRNA:   3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 2266 0.75 0.553481
Target:  5'- cCGUUGUUGAggagguaguCGUACUCGAGGgcAUCGCg -3'
miRNA:   3'- -GCAGCAGCU---------GCAUGAGCUUCa-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 2350 0.69 0.862303
Target:  5'- aGUCGUCGuuccgcguCGUcCUCGAAGUcguagaacuugACCGg -3'
miRNA:   3'- gCAGCAGCu-------GCAuGAGCUUCA-----------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 3176 0.69 0.853995
Target:  5'- aCGUCGUCGACGg---CGAGGa--CGUg -3'
miRNA:   3'- -GCAGCAGCUGCaugaGCUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 3359 0.74 0.606989
Target:  5'- gGUCGUCGACGUGCgUCGAcGGUguucuugGCCu- -3'
miRNA:   3'- gCAGCAGCUGCAUG-AGCU-UCA-------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 3920 0.67 0.931174
Target:  5'- aGUCGUCGaagGCGUcCUCGAaccggcuuuugaAGUGCaggguCGCg -3'
miRNA:   3'- gCAGCAGC---UGCAuGAGCU------------UCAUG-----GCG- -5'
16265 3' -50.9 NC_004084.1 + 4932 0.75 0.521402
Target:  5'- uCGcCGUCGACGUACUgGAugacGU-CCGCc -3'
miRNA:   3'- -GCaGCAGCUGCAUGAgCUu---CAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 5191 0.69 0.853995
Target:  5'- cCGcUCGUagaugacaCGACGgugcgACUCGAcGUGCUGCu -3'
miRNA:   3'- -GC-AGCA--------GCUGCa----UGAGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 5563 0.78 0.392841
Target:  5'- ---aGUCGACGUugUCGAGGUcGCCaGCg -3'
miRNA:   3'- gcagCAGCUGCAugAGCUUCA-UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 6259 0.69 0.836687
Target:  5'- -uUCGUCGACGUGgUCGgcGU-CCa- -3'
miRNA:   3'- gcAGCAGCUGCAUgAGCuuCAuGGcg -5'
16265 3' -50.9 NC_004084.1 + 6341 0.71 0.749275
Target:  5'- aCGUCGgCGAUGUACgcgaCGAAGgGgCGCg -3'
miRNA:   3'- -GCAGCaGCUGCAUGa---GCUUCaUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.