miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 58126 0.66 0.951067
Target:  5'- -cUCGUCGGCGg--UCGucGUcgaGCCGCc -3'
miRNA:   3'- gcAGCAGCUGCaugAGCuuCA---UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 58075 0.66 0.941669
Target:  5'- -uUCGaCGGCGUugUCGuugccguccuGGUcGCCGCg -3'
miRNA:   3'- gcAGCaGCUGCAugAGCu---------UCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 57414 0.72 0.685119
Target:  5'- aCGUCGcCGGCGaGCUCGAGGUggacaacaACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGCUUCA--------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 57120 0.7 0.799557
Target:  5'- aGUCGagGACGUcCUCGguGUcGCCGUc -3'
miRNA:   3'- gCAGCagCUGCAuGAGCuuCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 56280 0.68 0.87037
Target:  5'- aCGaCGUCGACcaccagguGUACuUCGAGG-ACUGCa -3'
miRNA:   3'- -GCaGCAGCUG--------CAUG-AGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 55980 0.66 0.93656
Target:  5'- -cUCGUCGACGg--UCGAuucACCGCc -3'
miRNA:   3'- gcAGCAGCUGCaugAGCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 55025 0.72 0.696005
Target:  5'- gCGUC-UCGuuGUGCUCGAGGagcuCCGCc -3'
miRNA:   3'- -GCAGcAGCugCAUGAGCUUCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 54590 0.78 0.383823
Target:  5'- cCGUCGUCGGCGUcgACgaagacuggaUCGAGGUcGCCGUu -3'
miRNA:   3'- -GCAGCAGCUGCA--UG----------AGCUUCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 54137 0.73 0.663205
Target:  5'- aCGUCGUgGAcuuugaggauguCGUGCUCGuuucUGCCGCg -3'
miRNA:   3'- -GCAGCAgCU------------GCAUGAGCuuc-AUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 53495 0.67 0.930621
Target:  5'- aGUaCGUCGACGg---CGAAGUcgucgugcgguagACUGCg -3'
miRNA:   3'- gCA-GCAGCUGCaugaGCUUCA-------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 53253 0.67 0.909488
Target:  5'- gGUCGUCGACGgcgACgagaucgggccgggCGAcGUccuggcgaccaGCCGCg -3'
miRNA:   3'- gCAGCAGCUGCa--UGa-------------GCUuCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 53248 0.8 0.301447
Target:  5'- aGUCGUCGAUcgACUCGA-GUGCUGCc -3'
miRNA:   3'- gCAGCAGCUGcaUGAGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 53155 0.67 0.931174
Target:  5'- aCGUCGUCGACGagGC-CGAug-ACUGa -3'
miRNA:   3'- -GCAGCAGCUGCa-UGaGCUucaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 52851 0.71 0.769827
Target:  5'- gCGgcaGUUGACGaucUGCUCGAgcGGUGCCGa -3'
miRNA:   3'- -GCag-CAGCUGC---AUGAGCU--UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 49814 0.76 0.479822
Target:  5'- uCGUCGUCGcCGcGCaUGAAGUACCGg -3'
miRNA:   3'- -GCAGCAGCuGCaUGaGCUUCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 49589 0.71 0.749275
Target:  5'- uCGUCGaCGAgGUACUUGGcgAGUucGCCGUc -3'
miRNA:   3'- -GCAGCaGCUgCAUGAGCU--UCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49559 1.13 0.002322
Target:  5'- cCGUCGUCGACGUACUCGAAGUACCGCu -3'
miRNA:   3'- -GCAGCAGCUGCAUGAGCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49404 0.69 0.836687
Target:  5'- aGUCGUCGugGUcCUCGA---ACCa- -3'
miRNA:   3'- gCAGCAGCugCAuGAGCUucaUGGcg -5'
16265 3' -50.9 NC_004084.1 + 49323 0.7 0.799557
Target:  5'- -cUCGUCGACaucGCccggUCGgcGUACCGCg -3'
miRNA:   3'- gcAGCAGCUGca-UG----AGCuuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49067 0.68 0.884259
Target:  5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3'
miRNA:   3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.