miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 3359 0.74 0.606989
Target:  5'- gGUCGUCGACGUGCgUCGAcGGUguucuugGCCu- -3'
miRNA:   3'- gCAGCAGCUGCAUG-AGCU-UCA-------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 36216 0.73 0.61911
Target:  5'- gCGUCGU-GACGUuguGCUCGGAGaACuCGCc -3'
miRNA:   3'- -GCAGCAgCUGCA---UGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 7494 0.73 0.652198
Target:  5'- gGUCGUCGACG---UCGAGGccgauCCGCu -3'
miRNA:   3'- gCAGCAGCUGCaugAGCUUCau---GGCG- -5'
16265 3' -50.9 NC_004084.1 + 54137 0.73 0.663205
Target:  5'- aCGUCGUgGAcuuugaggauguCGUGCUCGuuucUGCCGCg -3'
miRNA:   3'- -GCAGCAgCU------------GCAUGAGCuuc-AUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 57414 0.72 0.685119
Target:  5'- aCGUCGcCGGCGaGCUCGAGGUggacaacaACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGCUUCA--------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 55025 0.72 0.696005
Target:  5'- gCGUC-UCGuuGUGCUCGAGGagcuCCGCc -3'
miRNA:   3'- -GCAGcAGCugCAUGAGCUUCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 47895 0.72 0.706829
Target:  5'- -cUCGgcaacgCGACGgucGCUccgCGAGGUGCCGCg -3'
miRNA:   3'- gcAGCa-----GCUGCa--UGA---GCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 14339 0.72 0.706829
Target:  5'- cCGUCuucUCGAgGUACUgCGAGGUGCuaCGCg -3'
miRNA:   3'- -GCAGc--AGCUgCAUGA-GCUUCAUG--GCG- -5'
16265 3' -50.9 NC_004084.1 + 8817 0.72 0.706829
Target:  5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 18849 0.72 0.717579
Target:  5'- -cUCGUCGACGagcUGCUCG-AGUAC-GCa -3'
miRNA:   3'- gcAGCAGCUGC---AUGAGCuUCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 11042 0.71 0.738814
Target:  5'- uCGcCGUCGACG-ACgcggaCGAAGgggcgGCCGCc -3'
miRNA:   3'- -GCaGCAGCUGCaUGa----GCUUCa----UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 12858 0.71 0.738814
Target:  5'- --cCGUCGGCGUACuccgcuUCGAGGUcCuCGCg -3'
miRNA:   3'- gcaGCAGCUGCAUG------AGCUUCAuG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 343 0.71 0.738814
Target:  5'- uCGUCGUUGAgccaggUGgccuCUCGAAacuGUGCCGCg -3'
miRNA:   3'- -GCAGCAGCU------GCau--GAGCUU---CAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 6341 0.71 0.749275
Target:  5'- aCGUCGgCGAUGUACgcgaCGAAGgGgCGCg -3'
miRNA:   3'- -GCAGCaGCUGCAUGa---GCUUCaUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 49589 0.71 0.749275
Target:  5'- uCGUCGaCGAgGUACUUGGcgAGUucGCCGUc -3'
miRNA:   3'- -GCAGCaGCUgCAUGAGCU--UCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 30055 0.71 0.759616
Target:  5'- uCG-CGUCGuuGUGCcagccgUCGAGGcUGCCGCg -3'
miRNA:   3'- -GCaGCAGCugCAUG------AGCUUC-AUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 52851 0.71 0.769827
Target:  5'- gCGgcaGUUGACGaucUGCUCGAgcGGUGCCGa -3'
miRNA:   3'- -GCag-CAGCUGC---AUGAGCU--UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 16820 0.71 0.769827
Target:  5'- uCGUCcUCGACGUAgUCGAcGaucuCCGCu -3'
miRNA:   3'- -GCAGcAGCUGCAUgAGCUuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 35673 0.71 0.769827
Target:  5'- -cUCGUCGAUGUcCUCG---UACCGCu -3'
miRNA:   3'- gcAGCAGCUGCAuGAGCuucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 43398 0.71 0.769827
Target:  5'- gGcCGUCGAC--GCUCGAcGaGCCGCa -3'
miRNA:   3'- gCaGCAGCUGcaUGAGCUuCaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.