miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 13135 0.66 0.936034
Target:  5'- gGcCGUCGuCGUACUCGAccuccuucgGGUACacacagaUGCg -3'
miRNA:   3'- gCaGCAGCuGCAUGAGCU---------UCAUG-------GCG- -5'
16265 3' -50.9 NC_004084.1 + 53155 0.67 0.931174
Target:  5'- aCGUCGUCGACGagGC-CGAug-ACUGa -3'
miRNA:   3'- -GCAGCAGCUGCa-UGaGCUucaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 3920 0.67 0.931174
Target:  5'- aGUCGUCGaagGCGUcCUCGAaccggcuuuugaAGUGCaggguCGCg -3'
miRNA:   3'- gCAGCAGC---UGCAuGAGCU------------UCAUG-----GCG- -5'
16265 3' -50.9 NC_004084.1 + 46419 0.67 0.931174
Target:  5'- aGUUGUUGACGUcgcuggggaACUCGucGAGUugacuccaguCCGCg -3'
miRNA:   3'- gCAGCAGCUGCA---------UGAGC--UUCAu---------GGCG- -5'
16265 3' -50.9 NC_004084.1 + 6688 0.67 0.931174
Target:  5'- -cUCGaCGACGUccauCUCGAGGUcaacGCCGg -3'
miRNA:   3'- gcAGCaGCUGCAu---GAGCUUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 21111 0.67 0.931174
Target:  5'- gCGUCGUCGAUGaGgUCGAAcGUgGCCu- -3'
miRNA:   3'- -GCAGCAGCUGCaUgAGCUU-CA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 53495 0.67 0.930621
Target:  5'- aGUaCGUCGACGg---CGAAGUcgucgugcgguagACUGCg -3'
miRNA:   3'- gCA-GCAGCUGCaugaGCUUCA-------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1190 0.67 0.92781
Target:  5'- gGUCGUgGACGUagucgcguaagcGgUCGAAGUccuucgagauguuggACUGCg -3'
miRNA:   3'- gCAGCAgCUGCA------------UgAGCUUCA---------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1979 0.67 0.925511
Target:  5'- cCGUCGagaUCGuCGUuC-CGAcGGUGCCGCu -3'
miRNA:   3'- -GCAGC---AGCuGCAuGaGCU-UCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 29220 0.67 0.925511
Target:  5'- gCG-CGUCGACGUugUuCGcgggcGAGUACuCGUc -3'
miRNA:   3'- -GCaGCAGCUGCAugA-GC-----UUCAUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 39340 0.67 0.925511
Target:  5'- uCGaCGUCGACGUAgaCG----GCCGCg -3'
miRNA:   3'- -GCaGCAGCUGCAUgaGCuucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11094 0.67 0.920176
Target:  5'- gGUCGgCGACGagaucgccguucgcgGCUCGAAGgaugucccagaGCCGCu -3'
miRNA:   3'- gCAGCaGCUGCa--------------UGAGCUUCa----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1484 0.67 0.91957
Target:  5'- gCGcCGaCGACG-ACUaCGAAGU-CCGCc -3'
miRNA:   3'- -GCaGCaGCUGCaUGA-GCUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48346 0.67 0.91957
Target:  5'- uCGUCcUCGGCGUGCUcuacgacguaCGAucgACCGUg -3'
miRNA:   3'- -GCAGcAGCUGCAUGA----------GCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 2147 0.67 0.913351
Target:  5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3'
miRNA:   3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 37845 0.67 0.913351
Target:  5'- -uUCGUCGACGgccgAUUCGAAcuGgcCCGUc -3'
miRNA:   3'- gcAGCAGCUGCa---UGAGCUU--CauGGCG- -5'
16265 3' -50.9 NC_004084.1 + 18366 0.67 0.913351
Target:  5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3'
miRNA:   3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 29724 0.67 0.912714
Target:  5'- gCGUCGUCuGGCcguccgcccaGUGCUCGAcGUugagcucGCUGCg -3'
miRNA:   3'- -GCAGCAG-CUG----------CAUGAGCUuCA-------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 53253 0.67 0.909488
Target:  5'- gGUCGUCGACGgcgACgagaucgggccgggCGAcGUccuggcgaccaGCCGCg -3'
miRNA:   3'- gCAGCAGCUGCa--UGa-------------GCUuCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11147 0.67 0.906857
Target:  5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3'
miRNA:   3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.