miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 9943 0.68 0.90009
Target:  5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3'
miRNA:   3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 38206 0.68 0.893053
Target:  5'- --aCGUCGACGUGCUUGc---GCCGg -3'
miRNA:   3'- gcaGCAGCUGCAUGAGCuucaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 30157 0.68 0.885751
Target:  5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3'
miRNA:   3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 35358 0.68 0.885751
Target:  5'- gCGUCGcCGGCG-ACgaucgCGAAGUG-CGCc -3'
miRNA:   3'- -GCAGCaGCUGCaUGa----GCUUCAUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 7695 0.68 0.885751
Target:  5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 19656 0.68 0.885751
Target:  5'- gGUCGUCGuGCGUcaUCGGAcGUGCCu- -3'
miRNA:   3'- gCAGCAGC-UGCAugAGCUU-CAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 49067 0.68 0.884259
Target:  5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3'
miRNA:   3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46764 0.68 0.878188
Target:  5'- aGUCGUCGcCGaccgACgUCGAcGUGCUGUa -3'
miRNA:   3'- gCAGCAGCuGCa---UG-AGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 19979 0.68 0.87037
Target:  5'- aCGaCGUCGACGUcgcgcguucGCUCG-AGU-UCGCg -3'
miRNA:   3'- -GCaGCAGCUGCA---------UGAGCuUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 31350 0.68 0.87037
Target:  5'- uCGUCGUCGACG---UCG-AGcAUCGCg -3'
miRNA:   3'- -GCAGCAGCUGCaugAGCuUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 56280 0.68 0.87037
Target:  5'- aCGaCGUCGACcaccagguGUACuUCGAGG-ACUGCa -3'
miRNA:   3'- -GCaGCAGCUG--------CAUG-AGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 13768 0.68 0.87037
Target:  5'- gGUCGcgcUgGGCGgGCUCGGAG-AUCGCg -3'
miRNA:   3'- gCAGC---AgCUGCaUGAGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 2350 0.69 0.862303
Target:  5'- aGUCGUCGuuccgcguCGUcCUCGAAGUcguagaacuugACCGg -3'
miRNA:   3'- gCAGCAGCu-------GCAuGAGCUUCA-----------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 3176 0.69 0.853995
Target:  5'- aCGUCGUCGACGg---CGAGGa--CGUg -3'
miRNA:   3'- -GCAGCAGCUGCaugaGCUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 27790 0.69 0.853995
Target:  5'- gCGUCGUCG-CGaACUCGuAGU-CgGCg -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGCuUCAuGgCG- -5'
16265 3' -50.9 NC_004084.1 + 5191 0.69 0.853995
Target:  5'- cCGcUCGUagaugacaCGACGgugcgACUCGAcGUGCUGCu -3'
miRNA:   3'- -GC-AGCA--------GCUGCa----UGAGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 16646 0.69 0.853151
Target:  5'- uCGUCGUCGACGUcgUCcggGAGGUccucgucGCCGg -3'
miRNA:   3'- -GCAGCAGCUGCAugAG---CUUCA-------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 46302 0.69 0.845454
Target:  5'- aGUCGUCGACGUugACUCc--GU-UCGCg -3'
miRNA:   3'- gCAGCAGCUGCA--UGAGcuuCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 30097 0.69 0.845454
Target:  5'- --aCGgCGGCGaGCUCGAGGUgcucacuacucGCCGCc -3'
miRNA:   3'- gcaGCaGCUGCaUGAGCUUCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 6259 0.69 0.836687
Target:  5'- -uUCGUCGACGUGgUCGgcGU-CCa- -3'
miRNA:   3'- gcAGCAGCUGCAUgAGCuuCAuGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.