miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16266 3' -55.4 NC_004084.1 + 15885 0.66 0.763176
Target:  5'- gUCgAUCCGAGCGgCUUCcCGcagCGGGCg -3'
miRNA:   3'- -AGgUGGGCUUGCgGAAGcGCa--GCUUG- -5'
16266 3' -55.4 NC_004084.1 + 20234 0.66 0.763176
Target:  5'- gUCAUUCGAgaugACGCCga-GCGUCGAu- -3'
miRNA:   3'- aGGUGGGCU----UGCGGaagCGCAGCUug -5'
16266 3' -55.4 NC_004084.1 + 48024 0.66 0.753025
Target:  5'- aCgACCUGGACGacgaCgagcUCGaCGUCGAACu -3'
miRNA:   3'- aGgUGGGCUUGCg---Ga---AGC-GCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 26398 0.66 0.753025
Target:  5'- gUCCucgaACCCGAGC-CCUUC-CGUCGcgUg -3'
miRNA:   3'- -AGG----UGGGCUUGcGGAAGcGCAGCuuG- -5'
16266 3' -55.4 NC_004084.1 + 52474 0.66 0.753025
Target:  5'- aUCGCCUGGACGCCgUCGgGauagaCGAAg -3'
miRNA:   3'- aGGUGGGCUUGCGGaAGCgCa----GCUUg -5'
16266 3' -55.4 NC_004084.1 + 45757 0.66 0.753025
Target:  5'- gUCCGCUCGAucgggACGCCgauggaggUCauguggGCGUaCGAACg -3'
miRNA:   3'- -AGGUGGGCU-----UGCGGa-------AG------CGCA-GCUUG- -5'
16266 3' -55.4 NC_004084.1 + 35192 0.66 0.753025
Target:  5'- gCCGCUCGAGCuCCUccgaaucgUCGgGaUCGAGCc -3'
miRNA:   3'- aGGUGGGCUUGcGGA--------AGCgC-AGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 39349 0.66 0.732373
Target:  5'- aCCAUCCGAACcuGCCcgUUCGUGa-GGACg -3'
miRNA:   3'- aGGUGGGCUUG--CGG--AAGCGCagCUUG- -5'
16266 3' -55.4 NC_004084.1 + 6488 0.66 0.721895
Target:  5'- cCCGgCUGAGCGaa--CGUGUCGAACu -3'
miRNA:   3'- aGGUgGGCUUGCggaaGCGCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 50295 0.66 0.721895
Target:  5'- gCUACCCGAguaACGaCCacUCGC-UCGAGCc -3'
miRNA:   3'- aGGUGGGCU---UGC-GGa-AGCGcAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 50514 0.66 0.721895
Target:  5'- cUUCGCgCCGAcUGUCUcgguucggaUCGCGUCGAGg -3'
miRNA:   3'- -AGGUG-GGCUuGCGGA---------AGCGCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 41248 0.66 0.721895
Target:  5'- gCCuCCCu--CGCCUUCGaCGUCGccGGCg -3'
miRNA:   3'- aGGuGGGcuuGCGGAAGC-GCAGC--UUG- -5'
16266 3' -55.4 NC_004084.1 + 57387 0.67 0.700688
Target:  5'- --aACUCGAgcGCGCCcccgaUCGCGUCGAc- -3'
miRNA:   3'- aggUGGGCU--UGCGGa----AGCGCAGCUug -5'
16266 3' -55.4 NC_004084.1 + 49288 0.67 0.700688
Target:  5'- uUCCGCCCGAcggACGCCgaUCGaGUCcuuGACc -3'
miRNA:   3'- -AGGUGGGCU---UGCGGa-AGCgCAGc--UUG- -5'
16266 3' -55.4 NC_004084.1 + 29635 0.67 0.700688
Target:  5'- gUCgGCuCCGGACGUCgacgacCGCG-CGGACa -3'
miRNA:   3'- -AGgUG-GGCUUGCGGaa----GCGCaGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 7674 0.67 0.700688
Target:  5'- cCCACCCGAugugGCGCUcguacgUCGuCGU-GAACu -3'
miRNA:   3'- aGGUGGGCU----UGCGGa-----AGC-GCAgCUUG- -5'
16266 3' -55.4 NC_004084.1 + 5793 0.67 0.700688
Target:  5'- cUCACCCugguauccGACGCCgggCGUGUCGAc- -3'
miRNA:   3'- aGGUGGGc-------UUGCGGaa-GCGCAGCUug -5'
16266 3' -55.4 NC_004084.1 + 4240 0.67 0.689981
Target:  5'- cCCACCCGAcgugguCGCCUcguugcuucUCGCccuucgacgCGAACg -3'
miRNA:   3'- aGGUGGGCUu-----GCGGA---------AGCGca-------GCUUG- -5'
16266 3' -55.4 NC_004084.1 + 35327 0.67 0.674902
Target:  5'- gCUAUCCGAGguCGCCgacguccaccucgUCGCGUCGccGGCg -3'
miRNA:   3'- aGGUGGGCUU--GCGGa------------AGCGCAGC--UUG- -5'
16266 3' -55.4 NC_004084.1 + 55333 0.67 0.668415
Target:  5'- cCCGCCgGAACGCacgUCGa--CGAGCg -3'
miRNA:   3'- aGGUGGgCUUGCGga-AGCgcaGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.