Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 15885 | 0.66 | 0.763176 |
Target: 5'- gUCgAUCCGAGCGgCUUCcCGcagCGGGCg -3' miRNA: 3'- -AGgUGGGCUUGCgGAAGcGCa--GCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 20234 | 0.66 | 0.763176 |
Target: 5'- gUCAUUCGAgaugACGCCga-GCGUCGAu- -3' miRNA: 3'- aGGUGGGCU----UGCGGaagCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 26398 | 0.66 | 0.753025 |
Target: 5'- gUCCucgaACCCGAGC-CCUUC-CGUCGcgUg -3' miRNA: 3'- -AGG----UGGGCUUGcGGAAGcGCAGCuuG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 52474 | 0.66 | 0.753025 |
Target: 5'- aUCGCCUGGACGCCgUCGgGauagaCGAAg -3' miRNA: 3'- aGGUGGGCUUGCGGaAGCgCa----GCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 48024 | 0.66 | 0.753025 |
Target: 5'- aCgACCUGGACGacgaCgagcUCGaCGUCGAACu -3' miRNA: 3'- aGgUGGGCUUGCg---Ga---AGC-GCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 45757 | 0.66 | 0.753025 |
Target: 5'- gUCCGCUCGAucgggACGCCgauggaggUCauguggGCGUaCGAACg -3' miRNA: 3'- -AGGUGGGCU-----UGCGGa-------AG------CGCA-GCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 35192 | 0.66 | 0.753025 |
Target: 5'- gCCGCUCGAGCuCCUccgaaucgUCGgGaUCGAGCc -3' miRNA: 3'- aGGUGGGCUUGcGGA--------AGCgC-AGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 39349 | 0.66 | 0.732373 |
Target: 5'- aCCAUCCGAACcuGCCcgUUCGUGa-GGACg -3' miRNA: 3'- aGGUGGGCUUG--CGG--AAGCGCagCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 41248 | 0.66 | 0.721895 |
Target: 5'- gCCuCCCu--CGCCUUCGaCGUCGccGGCg -3' miRNA: 3'- aGGuGGGcuuGCGGAAGC-GCAGC--UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 50514 | 0.66 | 0.721895 |
Target: 5'- cUUCGCgCCGAcUGUCUcgguucggaUCGCGUCGAGg -3' miRNA: 3'- -AGGUG-GGCUuGCGGA---------AGCGCAGCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 50295 | 0.66 | 0.721895 |
Target: 5'- gCUACCCGAguaACGaCCacUCGC-UCGAGCc -3' miRNA: 3'- aGGUGGGCU---UGC-GGa-AGCGcAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 6488 | 0.66 | 0.721895 |
Target: 5'- cCCGgCUGAGCGaa--CGUGUCGAACu -3' miRNA: 3'- aGGUgGGCUUGCggaaGCGCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 57387 | 0.67 | 0.700688 |
Target: 5'- --aACUCGAgcGCGCCcccgaUCGCGUCGAc- -3' miRNA: 3'- aggUGGGCU--UGCGGa----AGCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 5793 | 0.67 | 0.700688 |
Target: 5'- cUCACCCugguauccGACGCCgggCGUGUCGAc- -3' miRNA: 3'- aGGUGGGc-------UUGCGGaa-GCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 7674 | 0.67 | 0.700688 |
Target: 5'- cCCACCCGAugugGCGCUcguacgUCGuCGU-GAACu -3' miRNA: 3'- aGGUGGGCU----UGCGGa-----AGC-GCAgCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 29635 | 0.67 | 0.700688 |
Target: 5'- gUCgGCuCCGGACGUCgacgacCGCG-CGGACa -3' miRNA: 3'- -AGgUG-GGCUUGCGGaa----GCGCaGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 49288 | 0.67 | 0.700688 |
Target: 5'- uUCCGCCCGAcggACGCCgaUCGaGUCcuuGACc -3' miRNA: 3'- -AGGUGGGCU---UGCGGa-AGCgCAGc--UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 4240 | 0.67 | 0.689981 |
Target: 5'- cCCACCCGAcgugguCGCCUcguugcuucUCGCccuucgacgCGAACg -3' miRNA: 3'- aGGUGGGCUu-----GCGGA---------AGCGca-------GCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 35327 | 0.67 | 0.674902 |
Target: 5'- gCUAUCCGAGguCGCCgacguccaccucgUCGCGUCGccGGCg -3' miRNA: 3'- aGGUGGGCUU--GCGGa------------AGCGCAGC--UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 55333 | 0.67 | 0.668415 |
Target: 5'- cCCGCCgGAACGCacgUCGa--CGAGCg -3' miRNA: 3'- aGGUGGgCUUGCGga-AGCgcaGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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