Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 6488 | 0.66 | 0.721895 |
Target: 5'- cCCGgCUGAGCGaa--CGUGUCGAACu -3' miRNA: 3'- aGGUgGGCUUGCggaaGCGCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 25372 | 0.68 | 0.614093 |
Target: 5'- aUCgACgUGAGCGCCgagucagUCGagGUCGAGCu -3' miRNA: 3'- -AGgUGgGCUUGCGGa------AGCg-CAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 48035 | 0.68 | 0.603237 |
Target: 5'- uUCgCGCUCGAuCGCCUgcucgacucucgUCGUucGUCGAACg -3' miRNA: 3'- -AG-GUGGGCUuGCGGA------------AGCG--CAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 49205 | 1.11 | 0.000913 |
Target: 5'- cUCCACCCGAACGCCUUCGCGUCGAACg -3' miRNA: 3'- -AGGUGGGCUUGCGGAAGCGCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 7674 | 0.67 | 0.700688 |
Target: 5'- cCCACCCGAugugGCGCUcguacgUCGuCGU-GAACu -3' miRNA: 3'- aGGUGGGCU----UGCGGa-----AGC-GCAgCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 5793 | 0.67 | 0.700688 |
Target: 5'- cUCACCCugguauccGACGCCgggCGUGUCGAc- -3' miRNA: 3'- aGGUGGGc-------UUGCGGaa-GCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 15885 | 0.66 | 0.763176 |
Target: 5'- gUCgAUCCGAGCGgCUUCcCGcagCGGGCg -3' miRNA: 3'- -AGgUGGGCUUGCgGAAGcGCa--GCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 52474 | 0.66 | 0.753025 |
Target: 5'- aUCGCCUGGACGCCgUCGgGauagaCGAAg -3' miRNA: 3'- aGGUGGGCUUGCGGaAGCgCa----GCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 26398 | 0.66 | 0.753025 |
Target: 5'- gUCCucgaACCCGAGC-CCUUC-CGUCGcgUg -3' miRNA: 3'- -AGG----UGGGCUUGcGGAAGcGCAGCuuG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 57664 | 0.68 | 0.623876 |
Target: 5'- aUCgGCCUGGugguccaGCGCCUcCGaCGUCGAGa -3' miRNA: 3'- -AGgUGGGCU-------UGCGGAaGC-GCAGCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 55856 | 0.68 | 0.646715 |
Target: 5'- aCgACgCGGACGUCUUCGCGgaaGAGg -3' miRNA: 3'- aGgUGgGCUUGCGGAAGCGCag-CUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 9133 | 0.67 | 0.667332 |
Target: 5'- -aCAUCCgGAACGCCUUCGacuucgcCGUCGccguGACg -3' miRNA: 3'- agGUGGG-CUUGCGGAAGC-------GCAGC----UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 41248 | 0.66 | 0.721895 |
Target: 5'- gCCuCCCu--CGCCUUCGaCGUCGccGGCg -3' miRNA: 3'- aGGuGGGcuuGCGGAAGC-GCAGC--UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 19647 | 0.68 | 0.635841 |
Target: 5'- -gCGCCCGAAgGUCgUCGUGcgucaUCGGACg -3' miRNA: 3'- agGUGGGCUUgCGGaAGCGC-----AGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 49288 | 0.67 | 0.700688 |
Target: 5'- uUCCGCCCGAcggACGCCgaUCGaGUCcuuGACc -3' miRNA: 3'- -AGGUGGGCU---UGCGGa-AGCgCAGc--UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 55333 | 0.67 | 0.668415 |
Target: 5'- cCCGCCgGAACGCacgUCGa--CGAGCg -3' miRNA: 3'- aGGUGGgCUUGCGga-AGCgcaGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 23339 | 0.68 | 0.624964 |
Target: 5'- gUCACCCGuaucAGCGUCUUCcGgGUCGAc- -3' miRNA: 3'- aGGUGGGC----UUGCGGAAG-CgCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 55586 | 0.68 | 0.603237 |
Target: 5'- aUCCACCgCGGACGCCga-G-GUUGAGg -3' miRNA: 3'- -AGGUGG-GCUUGCGGaagCgCAGCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 29635 | 0.67 | 0.700688 |
Target: 5'- gUCgGCuCCGGACGUCgacgacCGCG-CGGACa -3' miRNA: 3'- -AGgUG-GGCUUGCGGaa----GCGCaGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 4240 | 0.67 | 0.689981 |
Target: 5'- cCCACCCGAcgugguCGCCUcguugcuucUCGCccuucgacgCGAACg -3' miRNA: 3'- aGGUGGGCUu-----GCGGA---------AGCGca-------GCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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