Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16267 | 3' | -52.8 | NC_004084.1 | + | 45634 | 0.69 | 0.722838 |
Target: 5'- cUGUCGGUCGUcGacggcgucucggauGCCGACAacgacgagacgguCGGCGUCg -3' miRNA: 3'- -ACAGCUAGCA-C--------------UGGCUGU-------------GCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 44626 | 0.7 | 0.716499 |
Target: 5'- -cUCGGUCGcGACCaaccgGACGCGAUcUCCg -3' miRNA: 3'- acAGCUAGCaCUGG-----CUGUGCUGcAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 8824 | 0.7 | 0.716499 |
Target: 5'- gGUgGAgCGUGucGCCGACACaGugGUCg -3' miRNA: 3'- aCAgCUaGCAC--UGGCUGUG-CugCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 52470 | 0.7 | 0.672522 |
Target: 5'- aGUCGA---UGGCCGaggcgaaGCGCGACGUCa -3' miRNA: 3'- aCAGCUagcACUGGC-------UGUGCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 52695 | 0.71 | 0.651883 |
Target: 5'- --cCGAUCGagGACCucGGCccgaGCGACGUCCu -3' miRNA: 3'- acaGCUAGCa-CUGG--CUG----UGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 39602 | 0.71 | 0.651883 |
Target: 5'- cGUCcuccugGA-CGUGGCCG--GCGACGUCCu -3' miRNA: 3'- aCAG------CUaGCACUGGCugUGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 38839 | 0.71 | 0.630091 |
Target: 5'- cGUCGuccUCGUGGuCUGGgACGuCGUCCu -3' miRNA: 3'- aCAGCu--AGCACU-GGCUgUGCuGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 17454 | 0.71 | 0.619193 |
Target: 5'- cGUCcggGAUCGUcGACgGGaucaacucguuCGCGACGUCCg -3' miRNA: 3'- aCAG---CUAGCA-CUGgCU-----------GUGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 55064 | 0.71 | 0.619193 |
Target: 5'- gGUUGAaCgGUGGCCGGCGCGcuccuccccCGUCCg -3' miRNA: 3'- aCAGCUaG-CACUGGCUGUGCu--------GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 12943 | 0.71 | 0.619193 |
Target: 5'- cGUCu-UCGUGACCGACGauACG-CCa -3' miRNA: 3'- aCAGcuAGCACUGGCUGUgcUGCaGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 10573 | 0.71 | 0.618103 |
Target: 5'- cUGUCGAUCGagacggGACCGGCcugguugGCGugaGUCCc -3' miRNA: 3'- -ACAGCUAGCa-----CUGGCUG-------UGCug-CAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 50407 | 0.71 | 0.608305 |
Target: 5'- aUGUCGAUCGUaccGGUCGACACGucggauuCGUUCu -3' miRNA: 3'- -ACAGCUAGCA---CUGGCUGUGCu------GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 36458 | 0.72 | 0.597438 |
Target: 5'- gUGUCGAUCucGGCgGAgACGuCGUCCu -3' miRNA: 3'- -ACAGCUAGcaCUGgCUgUGCuGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 21124 | 0.72 | 0.597438 |
Target: 5'- gGUCGAaCGUGGCCucccAgAgGACGUCCu -3' miRNA: 3'- aCAGCUaGCACUGGc---UgUgCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 12408 | 0.72 | 0.5866 |
Target: 5'- cGUagcgGAUCGUGACCGuCuucuCGcCGUCCa -3' miRNA: 3'- aCAg---CUAGCACUGGCuGu---GCuGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 49060 | 0.72 | 0.565044 |
Target: 5'- cGgaaGAUCGUGACCGu--CGACGUgCg -3' miRNA: 3'- aCag-CUAGCACUGGCuguGCUGCAgG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 11661 | 0.72 | 0.554342 |
Target: 5'- cGUCGGUCGgcgacGACUacggcgagGACAgCGACGUCUa -3' miRNA: 3'- aCAGCUAGCa----CUGG--------CUGU-GCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 36148 | 0.72 | 0.554342 |
Target: 5'- cGUUGccUCGacugGAUCGACGuCGACGUCCg -3' miRNA: 3'- aCAGCu-AGCa---CUGGCUGU-GCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 31270 | 0.73 | 0.522627 |
Target: 5'- gGUCGAgcucgaaCGUGGCCGGuCGCGG-GUCCc -3' miRNA: 3'- aCAGCUa------GCACUGGCU-GUGCUgCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 55199 | 0.73 | 0.522627 |
Target: 5'- cGcUGAUCGUGGCCGACACGGuacacCCg -3' miRNA: 3'- aCaGCUAGCACUGGCUGUGCUgca--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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