miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 56212 0.67 0.825581
Target:  5'- aGUCGGgcgUGUGGCCGuGCAucuUGcCGUCCc -3'
miRNA:   3'- aCAGCUa--GCACUGGC-UGU---GCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 36947 0.68 0.816457
Target:  5'- cGUCGGUCGgguacgGACUGuu-CaGCGUCCg -3'
miRNA:   3'- aCAGCUAGCa-----CUGGCuguGcUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 4936 0.68 0.816457
Target:  5'- cGUCGA-CGU-ACUGG-AUGACGUCCg -3'
miRNA:   3'- aCAGCUaGCAcUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 22512 0.68 0.79765
Target:  5'- cGUCGA-CGcGGCCacuccaGCGgGACGUCCg -3'
miRNA:   3'- aCAGCUaGCaCUGGc-----UGUgCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52565 0.68 0.79765
Target:  5'- cGUCGAUCGUc-UUGAuCGCGACGUgCu -3'
miRNA:   3'- aCAGCUAGCAcuGGCU-GUGCUGCAgG- -5'
16267 3' -52.8 NC_004084.1 + 10406 0.68 0.787986
Target:  5'- cGUCcaGGUCGUcGACCaucucGCAguCGACGUCCu -3'
miRNA:   3'- aCAG--CUAGCA-CUGGc----UGU--GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 11394 0.68 0.787986
Target:  5'- --cCGGcaUCGUcAUCGAuCGCGACGUCCu -3'
miRNA:   3'- acaGCU--AGCAcUGGCU-GUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52957 0.68 0.778163
Target:  5'- cGUCG-UCGUGAUCGuCGCGA-GUgCg -3'
miRNA:   3'- aCAGCuAGCACUGGCuGUGCUgCAgG- -5'
16267 3' -52.8 NC_004084.1 + 12532 0.68 0.778163
Target:  5'- -cUCGAgagcuugcagGUGAgCGACgACGACGUCCc -3'
miRNA:   3'- acAGCUag--------CACUgGCUG-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 57639 0.68 0.775187
Target:  5'- gGUCGcgCGUcgccucgacgagccGAUCGGcCugGugGUCCa -3'
miRNA:   3'- aCAGCuaGCA--------------CUGGCU-GugCugCAGG- -5'
16267 3' -52.8 NC_004084.1 + 15104 0.69 0.768193
Target:  5'- cGUCGGU-GUGACCGuaGCGGuggaagcuCGUCCg -3'
miRNA:   3'- aCAGCUAgCACUGGCugUGCU--------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 9409 0.69 0.768193
Target:  5'- gUGUCGGUCacGAUCGACACGGa--CCg -3'
miRNA:   3'- -ACAGCUAGcaCUGGCUGUGCUgcaGG- -5'
16267 3' -52.8 NC_004084.1 + 44352 0.69 0.758084
Target:  5'- cGUCGGUCGcggUGACaacggcgagCGACAccuccugaacacCGAUGUCCa -3'
miRNA:   3'- aCAGCUAGC---ACUG---------GCUGU------------GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 48905 0.69 0.758084
Target:  5'- cGUCGGUCG-G-UCGGcCACGACuUCCg -3'
miRNA:   3'- aCAGCUAGCaCuGGCU-GUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 18806 0.69 0.758084
Target:  5'- cGUCGAggaCGUcGCCGGC-C-ACGUCCa -3'
miRNA:   3'- aCAGCUa--GCAcUGGCUGuGcUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 5127 0.69 0.74785
Target:  5'- cGUCGAUacaaccucggCGUGG-CGAC-CGACGUCg -3'
miRNA:   3'- aCAGCUA----------GCACUgGCUGuGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 10983 0.69 0.74785
Target:  5'- gGUCGaAUCG-GAUCGucuuguCGcCGACGUCCu -3'
miRNA:   3'- aCAGC-UAGCaCUGGCu-----GU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 16915 0.69 0.74682
Target:  5'- aGgCGAUCGUGGCCGggugcgguucgGCaucggcgggcgucGCGACGUCg -3'
miRNA:   3'- aCaGCUAGCACUGGC-----------UG-------------UGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 40434 0.69 0.7375
Target:  5'- cUGUUcgaGAUCGaGGCCGAgggcgacacCgACGACGUCCa -3'
miRNA:   3'- -ACAG---CUAGCaCUGGCU---------G-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 49349 0.69 0.727046
Target:  5'- gUGUCGAg-GUGAUCGu--CGACGUCg -3'
miRNA:   3'- -ACAGCUagCACUGGCuguGCUGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.