Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16267 | 3' | -52.8 | NC_004084.1 | + | 23304 | 0.66 | 0.875828 |
Target: 5'- aG-CGAgcgCGUGACCGAgaGCG-CGUaCCa -3' miRNA: 3'- aCaGCUa--GCACUGGCUg-UGCuGCA-GG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 48312 | 0.66 | 0.875828 |
Target: 5'- aGUCGAgcagugcagUGUGAUCGuCGCGcccccuuCGUCCu -3' miRNA: 3'- aCAGCUa--------GCACUGGCuGUGCu------GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 23063 | 0.66 | 0.875828 |
Target: 5'- cG-CGAUCGUcGCCGGCgacGCGACGa-- -3' miRNA: 3'- aCaGCUAGCAcUGGCUG---UGCUGCagg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 17049 | 0.66 | 0.875059 |
Target: 5'- cGUCGAUgCgGUGACUGACgucgcaaGCGGUGUUCg -3' miRNA: 3'- aCAGCUA-G-CACUGGCUG-------UGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 16857 | 0.67 | 0.868029 |
Target: 5'- cGUCGAUgaucgcaaGUGGgaucUCGAgCGCGGCGUCUg -3' miRNA: 3'- aCAGCUAg-------CACU----GGCU-GUGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 16791 | 0.67 | 0.868029 |
Target: 5'- cGUCGAUguccCG-GACCGucgccuCGCGuuCGUCCu -3' miRNA: 3'- aCAGCUA----GCaCUGGCu-----GUGCu-GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 38309 | 0.67 | 0.867236 |
Target: 5'- cGUCGAcgagCGUGACguCGAUAuCGACGgucgucuUCCg -3' miRNA: 3'- aCAGCUa---GCACUG--GCUGU-GCUGC-------AGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 53159 | 0.67 | 0.85999 |
Target: 5'- cGUCGA-CGaGGCCGAUgacugaccccaGCGuguuCGUCCg -3' miRNA: 3'- aCAGCUaGCaCUGGCUG-----------UGCu---GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 27802 | 0.67 | 0.85999 |
Target: 5'- -cUUGAUCGcGAaggggauggacaUCGAcCGCGGCGUCCg -3' miRNA: 3'- acAGCUAGCaCU------------GGCU-GUGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 1808 | 0.67 | 0.85999 |
Target: 5'- cGgCGAacUCGccGACCGGCgACGACG-CCg -3' miRNA: 3'- aCaGCU--AGCa-CUGGCUG-UGCUGCaGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 39637 | 0.67 | 0.85999 |
Target: 5'- aGUCGAUCGU-----ACGCGACG-CCg -3' miRNA: 3'- aCAGCUAGCAcuggcUGUGCUGCaGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 41421 | 0.67 | 0.857533 |
Target: 5'- cUGU-GAUCGUaccuacuaaagcugGGCCGACGCGAUcgagGUCUu -3' miRNA: 3'- -ACAgCUAGCA--------------CUGGCUGUGCUG----CAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 48431 | 0.67 | 0.851718 |
Target: 5'- cGUCGAcgUCGUcGGCCaguacggugaACACGAUGUCg -3' miRNA: 3'- aCAGCU--AGCA-CUGGc---------UGUGCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 18019 | 0.67 | 0.851718 |
Target: 5'- cGUCGA-CGgcGAgUGugAUGugGUCCg -3' miRNA: 3'- aCAGCUaGCa-CUgGCugUGCugCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 56116 | 0.67 | 0.833622 |
Target: 5'- cGUCGAcgUCGUGcGCCG-CAgugucguCGGCGUCg -3' miRNA: 3'- aCAGCU--AGCAC-UGGCuGU-------GCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 41271 | 0.67 | 0.826482 |
Target: 5'- cGgCGAUCGUccccaucagugaaccGCCGACcucauCGACGUCCu -3' miRNA: 3'- aCaGCUAGCAc--------------UGGCUGu----GCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 40330 | 0.67 | 0.825581 |
Target: 5'- -aUCGAUCGUGGuuGAaacuCGAUGUUg -3' miRNA: 3'- acAGCUAGCACUggCUgu--GCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 54813 | 0.67 | 0.825581 |
Target: 5'- aGUCGGUCcaGGCCGuCugGAggaCGUUCg -3' miRNA: 3'- aCAGCUAGcaCUGGCuGugCU---GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 30342 | 0.67 | 0.825581 |
Target: 5'- cGUCGGcgagGUGGCCGA--CGGCGUCg -3' miRNA: 3'- aCAGCUag--CACUGGCUguGCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 15733 | 0.67 | 0.825581 |
Target: 5'- cGUCGuUCGUGAgCGugAUGAUGa-- -3' miRNA: 3'- aCAGCuAGCACUgGCugUGCUGCagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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