miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 10573 0.71 0.618103
Target:  5'- cUGUCGAUCGagacggGACCGGCcugguugGCGugaGUCCc -3'
miRNA:   3'- -ACAGCUAGCa-----CUGGCUG-------UGCug-CAGG- -5'
16267 3' -52.8 NC_004084.1 + 12943 0.71 0.619193
Target:  5'- cGUCu-UCGUGACCGACGauACG-CCa -3'
miRNA:   3'- aCAGcuAGCACUGGCUGUgcUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 55064 0.71 0.619193
Target:  5'- gGUUGAaCgGUGGCCGGCGCGcuccuccccCGUCCg -3'
miRNA:   3'- aCAGCUaG-CACUGGCUGUGCu--------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 17454 0.71 0.619193
Target:  5'- cGUCcggGAUCGUcGACgGGaucaacucguuCGCGACGUCCg -3'
miRNA:   3'- aCAG---CUAGCA-CUGgCU-----------GUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 38839 0.71 0.630091
Target:  5'- cGUCGuccUCGUGGuCUGGgACGuCGUCCu -3'
miRNA:   3'- aCAGCu--AGCACU-GGCUgUGCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52695 0.71 0.651883
Target:  5'- --cCGAUCGagGACCucGGCccgaGCGACGUCCu -3'
miRNA:   3'- acaGCUAGCa-CUGG--CUG----UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 39602 0.71 0.651883
Target:  5'- cGUCcuccugGA-CGUGGCCG--GCGACGUCCu -3'
miRNA:   3'- aCAG------CUaGCACUGGCugUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52470 0.7 0.672522
Target:  5'- aGUCGA---UGGCCGaggcgaaGCGCGACGUCa -3'
miRNA:   3'- aCAGCUagcACUGGC-------UGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 8824 0.7 0.716499
Target:  5'- gGUgGAgCGUGucGCCGACACaGugGUCg -3'
miRNA:   3'- aCAgCUaGCAC--UGGCUGUG-CugCAGg -5'
16267 3' -52.8 NC_004084.1 + 44626 0.7 0.716499
Target:  5'- -cUCGGUCGcGACCaaccgGACGCGAUcUCCg -3'
miRNA:   3'- acAGCUAGCaCUGG-----CUGUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 45634 0.69 0.722838
Target:  5'- cUGUCGGUCGUcGacggcgucucggauGCCGACAacgacgagacgguCGGCGUCg -3'
miRNA:   3'- -ACAGCUAGCA-C--------------UGGCUGU-------------GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 49349 0.69 0.727046
Target:  5'- gUGUCGAg-GUGAUCGu--CGACGUCg -3'
miRNA:   3'- -ACAGCUagCACUGGCuguGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 40434 0.69 0.7375
Target:  5'- cUGUUcgaGAUCGaGGCCGAgggcgacacCgACGACGUCCa -3'
miRNA:   3'- -ACAG---CUAGCaCUGGCU---------G-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 16915 0.69 0.74682
Target:  5'- aGgCGAUCGUGGCCGggugcgguucgGCaucggcgggcgucGCGACGUCg -3'
miRNA:   3'- aCaGCUAGCACUGGC-----------UG-------------UGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 5127 0.69 0.74785
Target:  5'- cGUCGAUacaaccucggCGUGG-CGAC-CGACGUCg -3'
miRNA:   3'- aCAGCUA----------GCACUgGCUGuGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 10983 0.69 0.74785
Target:  5'- gGUCGaAUCG-GAUCGucuuguCGcCGACGUCCu -3'
miRNA:   3'- aCAGC-UAGCaCUGGCu-----GU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 44352 0.69 0.758084
Target:  5'- cGUCGGUCGcggUGACaacggcgagCGACAccuccugaacacCGAUGUCCa -3'
miRNA:   3'- aCAGCUAGC---ACUG---------GCUGU------------GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 48905 0.69 0.758084
Target:  5'- cGUCGGUCG-G-UCGGcCACGACuUCCg -3'
miRNA:   3'- aCAGCUAGCaCuGGCU-GUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 18806 0.69 0.758084
Target:  5'- cGUCGAggaCGUcGCCGGC-C-ACGUCCa -3'
miRNA:   3'- aCAGCUa--GCAcUGGCUGuGcUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 15104 0.69 0.768193
Target:  5'- cGUCGGU-GUGACCGuaGCGGuggaagcuCGUCCg -3'
miRNA:   3'- aCAGCUAgCACUGGCugUGCU--------GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.