miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 31270 0.73 0.522627
Target:  5'- gGUCGAgcucgaaCGUGGCCGGuCGCGG-GUCCc -3'
miRNA:   3'- aCAGCUa------GCACUGGCU-GUGCUgCAGG- -5'
16267 3' -52.8 NC_004084.1 + 55199 0.73 0.522627
Target:  5'- cGcUGAUCGUGGCCGACACGGuacacCCg -3'
miRNA:   3'- aCaGCUAGCACUGGCUGUGCUgca--GG- -5'
16267 3' -52.8 NC_004084.1 + 11661 0.72 0.554342
Target:  5'- cGUCGGUCGgcgacGACUacggcgagGACAgCGACGUCUa -3'
miRNA:   3'- aCAGCUAGCa----CUGG--------CUGU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 12943 0.71 0.619193
Target:  5'- cGUCu-UCGUGACCGACGauACG-CCa -3'
miRNA:   3'- aCAGcuAGCACUGGCUGUgcUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 40434 0.69 0.7375
Target:  5'- cUGUUcgaGAUCGaGGCCGAgggcgacacCgACGACGUCCa -3'
miRNA:   3'- -ACAG---CUAGCaCUGGCU---------G-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 45634 0.69 0.722838
Target:  5'- cUGUCGGUCGUcGacggcgucucggauGCCGACAacgacgagacgguCGGCGUCg -3'
miRNA:   3'- -ACAGCUAGCA-C--------------UGGCUGU-------------GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 44626 0.7 0.716499
Target:  5'- -cUCGGUCGcGACCaaccgGACGCGAUcUCCg -3'
miRNA:   3'- acAGCUAGCaCUGG-----CUGUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 52470 0.7 0.672522
Target:  5'- aGUCGA---UGGCCGaggcgaaGCGCGACGUCa -3'
miRNA:   3'- aCAGCUagcACUGGC-------UGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 52695 0.71 0.651883
Target:  5'- --cCGAUCGagGACCucGGCccgaGCGACGUCCu -3'
miRNA:   3'- acaGCUAGCa-CUGG--CUG----UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 39602 0.71 0.651883
Target:  5'- cGUCcuccugGA-CGUGGCCG--GCGACGUCCu -3'
miRNA:   3'- aCAG------CUaGCACUGGCugUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 35129 0.66 0.890677
Target:  5'- uUGUCGAUCcUGGgCGu--CGAgGUCCu -3'
miRNA:   3'- -ACAGCUAGcACUgGCuguGCUgCAGG- -5'
16267 3' -52.8 NC_004084.1 + 560 0.66 0.890677
Target:  5'- aGUCGAg-GUGACguuCGCGAUGUCg -3'
miRNA:   3'- aCAGCUagCACUGgcuGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 8157 0.66 0.890677
Target:  5'- --cUGGUCGUG-CCGACcagcccgcuccaGCGACG-CCu -3'
miRNA:   3'- acaGCUAGCACuGGCUG------------UGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 8897 0.66 0.890677
Target:  5'- -cUCGAUCGUccguggaugccGACCGGaucgaguCGACGUaCCg -3'
miRNA:   3'- acAGCUAGCA-----------CUGGCUgu-----GCUGCA-GG- -5'
16267 3' -52.8 NC_004084.1 + 27336 0.66 0.890677
Target:  5'- -uUCGAgggacgCGgugGGCCGG-ACGACGUCUc -3'
miRNA:   3'- acAGCUa-----GCa--CUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 32038 0.66 0.903831
Target:  5'- cGUCGcGUC-UGACCagacGGCgauggauucgguuGCGGCGUCCa -3'
miRNA:   3'- aCAGC-UAGcACUGG----CUG-------------UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 22565 0.66 0.904497
Target:  5'- aUGuUCGAcUCGgcguucGGCCGAU-CGGCGUCUg -3'
miRNA:   3'- -AC-AGCU-AGCa-----CUGGCUGuGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 14159 0.66 0.904497
Target:  5'- cGUCG-UCGUGAa-GGC-CGGuCGUCCc -3'
miRNA:   3'- aCAGCuAGCACUggCUGuGCU-GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 46480 0.66 0.904497
Target:  5'- -cUCGAUCGaguccucGCUGGuCGCGACGUCg -3'
miRNA:   3'- acAGCUAGCac-----UGGCU-GUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 49013 1.12 0.001555
Target:  5'- gUGUCGAUCGUGACCGACACGACGUCCu -3'
miRNA:   3'- -ACAGCUAGCACUGGCUGUGCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.