miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 53159 0.67 0.85999
Target:  5'- cGUCGA-CGaGGCCGAUgacugaccccaGCGuguuCGUCCg -3'
miRNA:   3'- aCAGCUaGCaCUGGCUG-----------UGCu---GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 45634 0.69 0.722838
Target:  5'- cUGUCGGUCGUcGacggcgucucggauGCCGACAacgacgagacgguCGGCGUCg -3'
miRNA:   3'- -ACAGCUAGCA-C--------------UGGCUGU-------------GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 40434 0.69 0.7375
Target:  5'- cUGUUcgaGAUCGaGGCCGAgggcgacacCgACGACGUCCa -3'
miRNA:   3'- -ACAG---CUAGCaCUGGCU---------G-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 5127 0.69 0.74785
Target:  5'- cGUCGAUacaaccucggCGUGG-CGAC-CGACGUCg -3'
miRNA:   3'- aCAGCUA----------GCACUgGCUGuGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 44352 0.69 0.758084
Target:  5'- cGUCGGUCGcggUGACaacggcgagCGACAccuccugaacacCGAUGUCCa -3'
miRNA:   3'- aCAGCUAGC---ACUG---------GCUGU------------GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 9409 0.69 0.768193
Target:  5'- gUGUCGGUCacGAUCGACACGGa--CCg -3'
miRNA:   3'- -ACAGCUAGcaCUGGCUGUGCUgcaGG- -5'
16267 3' -52.8 NC_004084.1 + 12532 0.68 0.778163
Target:  5'- -cUCGAgagcuugcagGUGAgCGACgACGACGUCCc -3'
miRNA:   3'- acAGCUag--------CACUgGCUG-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 39637 0.67 0.85999
Target:  5'- aGUCGAUCGU-----ACGCGACG-CCg -3'
miRNA:   3'- aCAGCUAGCAcuggcUGUGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 1808 0.67 0.85999
Target:  5'- cGgCGAacUCGccGACCGGCgACGACG-CCg -3'
miRNA:   3'- aCaGCU--AGCa-CUGGCUG-UGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 44626 0.7 0.716499
Target:  5'- -cUCGGUCGcGACCaaccgGACGCGAUcUCCg -3'
miRNA:   3'- acAGCUAGCaCUGG-----CUGUGCUGcAGG- -5'
16267 3' -52.8 NC_004084.1 + 52470 0.7 0.672522
Target:  5'- aGUCGA---UGGCCGaggcgaaGCGCGACGUCa -3'
miRNA:   3'- aCAGCUagcACUGGC-------UGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 52695 0.71 0.651883
Target:  5'- --cCGAUCGagGACCucGGCccgaGCGACGUCCu -3'
miRNA:   3'- acaGCUAGCa-CUGG--CUG----UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 53256 0.75 0.441997
Target:  5'- cGUCGAcggcgacgagaUCG-GGCCGG-GCGACGUCCu -3'
miRNA:   3'- aCAGCU-----------AGCaCUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 53028 0.74 0.471455
Target:  5'- -aUCGAgCGgaagaaguccGGCUGGCACGGCGUCCg -3'
miRNA:   3'- acAGCUaGCa---------CUGGCUGUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 23025 0.74 0.481495
Target:  5'- cGUCGGUCGUGAucuggagcuUCGACACugacggcaguGGCGUCg -3'
miRNA:   3'- aCAGCUAGCACU---------GGCUGUG----------CUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 31270 0.73 0.522627
Target:  5'- gGUCGAgcucgaaCGUGGCCGGuCGCGG-GUCCc -3'
miRNA:   3'- aCAGCUa------GCACUGGCU-GUGCUgCAGG- -5'
16267 3' -52.8 NC_004084.1 + 55199 0.73 0.522627
Target:  5'- cGcUGAUCGUGGCCGACACGGuacacCCg -3'
miRNA:   3'- aCaGCUAGCACUGGCUGUGCUgca--GG- -5'
16267 3' -52.8 NC_004084.1 + 11661 0.72 0.554342
Target:  5'- cGUCGGUCGgcgacGACUacggcgagGACAgCGACGUCUa -3'
miRNA:   3'- aCAGCUAGCa----CUGG--------CUGU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 12943 0.71 0.619193
Target:  5'- cGUCu-UCGUGACCGACGauACG-CCa -3'
miRNA:   3'- aCAGcuAGCACUGGCUGUgcUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 39602 0.71 0.651883
Target:  5'- cGUCcuccugGA-CGUGGCCG--GCGACGUCCu -3'
miRNA:   3'- aCAG------CUaGCACUGGCugUGCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.