miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 560 0.66 0.890677
Target:  5'- aGUCGAg-GUGACguuCGCGAUGUCg -3'
miRNA:   3'- aCAGCUagCACUGgcuGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 1536 0.78 0.268837
Target:  5'- gGUCGGUCuG-GACCGAgGCGACGgCCg -3'
miRNA:   3'- aCAGCUAG-CaCUGGCUgUGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 1676 0.78 0.297086
Target:  5'- cGUCGggCGaccUGAUCGACGCGAaggaCGUCCg -3'
miRNA:   3'- aCAGCuaGC---ACUGGCUGUGCU----GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 1808 0.67 0.85999
Target:  5'- cGgCGAacUCGccGACCGGCgACGACG-CCg -3'
miRNA:   3'- aCaGCU--AGCa-CUGGCUG-UGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 4936 0.68 0.816457
Target:  5'- cGUCGA-CGU-ACUGG-AUGACGUCCg -3'
miRNA:   3'- aCAGCUaGCAcUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 5127 0.69 0.74785
Target:  5'- cGUCGAUacaaccucggCGUGG-CGAC-CGACGUCg -3'
miRNA:   3'- aCAGCUA----------GCACUgGCUGuGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 6418 0.66 0.875828
Target:  5'- cGUUGAUCG-GAUgaCGAgACGugGUgCg -3'
miRNA:   3'- aCAGCUAGCaCUG--GCUgUGCugCAgG- -5'
16267 3' -52.8 NC_004084.1 + 6874 0.66 0.882635
Target:  5'- aGcCGGUCGUGgauGCCGAgguacgucgggauCGCGACcGUCUc -3'
miRNA:   3'- aCaGCUAGCAC---UGGCU-------------GUGCUG-CAGG- -5'
16267 3' -52.8 NC_004084.1 + 8157 0.66 0.890677
Target:  5'- --cUGGUCGUG-CCGACcagcccgcuccaGCGACG-CCu -3'
miRNA:   3'- acaGCUAGCACuGGCUG------------UGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 8824 0.7 0.716499
Target:  5'- gGUgGAgCGUGucGCCGACACaGugGUCg -3'
miRNA:   3'- aCAgCUaGCAC--UGGCUGUG-CugCAGg -5'
16267 3' -52.8 NC_004084.1 + 8897 0.66 0.890677
Target:  5'- -cUCGAUCGUccguggaugccGACCGGaucgaguCGACGUaCCg -3'
miRNA:   3'- acAGCUAGCA-----------CUGGCUgu-----GCUGCA-GG- -5'
16267 3' -52.8 NC_004084.1 + 9409 0.69 0.768193
Target:  5'- gUGUCGGUCacGAUCGACACGGa--CCg -3'
miRNA:   3'- -ACAGCUAGcaCUGGCUGUGCUgcaGG- -5'
16267 3' -52.8 NC_004084.1 + 10406 0.68 0.787986
Target:  5'- cGUCcaGGUCGUcGACCaucucGCAguCGACGUCCu -3'
miRNA:   3'- aCAG--CUAGCA-CUGGc----UGU--GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 10573 0.71 0.618103
Target:  5'- cUGUCGAUCGagacggGACCGGCcugguugGCGugaGUCCc -3'
miRNA:   3'- -ACAGCUAGCa-----CUGGCUG-------UGCug-CAGG- -5'
16267 3' -52.8 NC_004084.1 + 10983 0.69 0.74785
Target:  5'- gGUCGaAUCG-GAUCGucuuguCGcCGACGUCCu -3'
miRNA:   3'- aCAGC-UAGCaCUGGCu-----GU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 11394 0.68 0.787986
Target:  5'- --cCGGcaUCGUcAUCGAuCGCGACGUCCu -3'
miRNA:   3'- acaGCU--AGCAcUGGCU-GUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 11661 0.72 0.554342
Target:  5'- cGUCGGUCGgcgacGACUacggcgagGACAgCGACGUCUa -3'
miRNA:   3'- aCAGCUAGCa----CUGG--------CUGU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 12408 0.72 0.5866
Target:  5'- cGUagcgGAUCGUGACCGuCuucuCGcCGUCCa -3'
miRNA:   3'- aCAg---CUAGCACUGGCuGu---GCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 12532 0.68 0.778163
Target:  5'- -cUCGAgagcuugcagGUGAgCGACgACGACGUCCc -3'
miRNA:   3'- acAGCUag--------CACUgGCUG-UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 12589 0.66 0.903831
Target:  5'- --aUGAUCGagGACgCGAUcaagggaACGAUGUCCg -3'
miRNA:   3'- acaGCUAGCa-CUG-GCUG-------UGCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.