miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 58393 0.66 0.890677
Target:  5'- -cUCG---GUGGCCGACACGACcUCg -3'
miRNA:   3'- acAGCuagCACUGGCUGUGCUGcAGg -5'
16267 3' -52.8 NC_004084.1 + 57639 0.68 0.775187
Target:  5'- gGUCGcgCGUcgccucgacgagccGAUCGGcCugGugGUCCa -3'
miRNA:   3'- aCAGCuaGCA--------------CUGGCU-GugCugCAGG- -5'
16267 3' -52.8 NC_004084.1 + 56520 0.66 0.907134
Target:  5'- aUGUCGGUCGgccccauccccgacuUGGCgUGGCaguccaggagGCGACGUCg -3'
miRNA:   3'- -ACAGCUAGC---------------ACUG-GCUG----------UGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 56212 0.67 0.825581
Target:  5'- aGUCGGgcgUGUGGCCGuGCAucuUGcCGUCCc -3'
miRNA:   3'- aCAGCUa--GCACUGGC-UGU---GCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 56116 0.67 0.833622
Target:  5'- cGUCGAcgUCGUGcGCCG-CAgugucguCGGCGUCg -3'
miRNA:   3'- aCAGCU--AGCAC-UGGCuGU-------GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 55199 0.73 0.522627
Target:  5'- cGcUGAUCGUGGCCGACACGGuacacCCg -3'
miRNA:   3'- aCaGCUAGCACUGGCUGUGCUgca--GG- -5'
16267 3' -52.8 NC_004084.1 + 55064 0.71 0.619193
Target:  5'- gGUUGAaCgGUGGCCGGCGCGcuccuccccCGUCCg -3'
miRNA:   3'- aCAGCUaG-CACUGGCUGUGCu--------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 54813 0.67 0.825581
Target:  5'- aGUCGGUCcaGGCCGuCugGAggaCGUUCg -3'
miRNA:   3'- aCAGCUAGcaCUGGCuGugCU---GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 53256 0.75 0.441997
Target:  5'- cGUCGAcggcgacgagaUCG-GGCCGG-GCGACGUCCu -3'
miRNA:   3'- aCAGCU-----------AGCaCUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 53159 0.67 0.85999
Target:  5'- cGUCGA-CGaGGCCGAUgacugaccccaGCGuguuCGUCCg -3'
miRNA:   3'- aCAGCUaGCaCUGGCUG-----------UGCu---GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 53028 0.74 0.471455
Target:  5'- -aUCGAgCGgaagaaguccGGCUGGCACGGCGUCCg -3'
miRNA:   3'- acAGCUaGCa---------CUGGCUGUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52957 0.68 0.778163
Target:  5'- cGUCG-UCGUGAUCGuCGCGA-GUgCg -3'
miRNA:   3'- aCAGCuAGCACUGGCuGUGCUgCAgG- -5'
16267 3' -52.8 NC_004084.1 + 52695 0.71 0.651883
Target:  5'- --cCGAUCGagGACCucGGCccgaGCGACGUCCu -3'
miRNA:   3'- acaGCUAGCa-CUGG--CUG----UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 52565 0.68 0.79765
Target:  5'- cGUCGAUCGUc-UUGAuCGCGACGUgCu -3'
miRNA:   3'- aCAGCUAGCAcuGGCU-GUGCUGCAgG- -5'
16267 3' -52.8 NC_004084.1 + 52470 0.7 0.672522
Target:  5'- aGUCGA---UGGCCGaggcgaaGCGCGACGUCa -3'
miRNA:   3'- aCAGCUagcACUGGC-------UGUGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 50776 0.66 0.890677
Target:  5'- cUG-CGAUUGUgaGACCGACgagACGAacccgggaauCGUCCu -3'
miRNA:   3'- -ACaGCUAGCA--CUGGCUG---UGCU----------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 50407 0.71 0.608305
Target:  5'- aUGUCGAUCGUaccGGUCGACACGucggauuCGUUCu -3'
miRNA:   3'- -ACAGCUAGCA---CUGGCUGUGCu------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 49349 0.69 0.727046
Target:  5'- gUGUCGAg-GUGAUCGu--CGACGUCg -3'
miRNA:   3'- -ACAGCUagCACUGGCuguGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 49060 0.72 0.565044
Target:  5'- cGgaaGAUCGUGACCGu--CGACGUgCg -3'
miRNA:   3'- aCag-CUAGCACUGGCuguGCUGCAgG- -5'
16267 3' -52.8 NC_004084.1 + 49013 1.12 0.001555
Target:  5'- gUGUCGAUCGUGACCGACACGACGUCCu -3'
miRNA:   3'- -ACAGCUAGCACUGGCUGUGCUGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.