miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 49013 1.12 0.001555
Target:  5'- gUGUCGAUCGUGACCGACACGACGUCCu -3'
miRNA:   3'- -ACAGCUAGCACUGGCUGUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 1536 0.78 0.268837
Target:  5'- gGUCGGUCuG-GACCGAgGCGACGgCCg -3'
miRNA:   3'- aCAGCUAG-CaCUGGCUgUGCUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 1676 0.78 0.297086
Target:  5'- cGUCGggCGaccUGAUCGACGCGAaggaCGUCCg -3'
miRNA:   3'- aCAGCuaGC---ACUGGCUGUGCU----GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 29573 0.76 0.368883
Target:  5'- -uUCGAgguUCGUGACCGAgACGGCGaaCCg -3'
miRNA:   3'- acAGCU---AGCACUGGCUgUGCUGCa-GG- -5'
16267 3' -52.8 NC_004084.1 + 16629 0.76 0.368883
Target:  5'- gGUCGAUCGUGACgcccuCGuCGuCGACGUCg -3'
miRNA:   3'- aCAGCUAGCACUG-----GCuGU-GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 53256 0.75 0.441997
Target:  5'- cGUCGAcggcgacgagaUCG-GGCCGG-GCGACGUCCu -3'
miRNA:   3'- aCAGCU-----------AGCaCUGGCUgUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 53028 0.74 0.471455
Target:  5'- -aUCGAgCGgaagaaguccGGCUGGCACGGCGUCCg -3'
miRNA:   3'- acAGCUaGCa---------CUGGCUGUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 23025 0.74 0.481495
Target:  5'- cGUCGGUCGUGAucuggagcuUCGACACugacggcaguGGCGUCg -3'
miRNA:   3'- aCAGCUAGCACU---------GGCUGUG----------CUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 46764 0.74 0.481495
Target:  5'- aGUCG-UCGccGACCGACGuCGACGUgCu -3'
miRNA:   3'- aCAGCuAGCa-CUGGCUGU-GCUGCAgG- -5'
16267 3' -52.8 NC_004084.1 + 46566 0.73 0.522627
Target:  5'- cGUCGGUCGUGAacUCGAUAuCGcCGUCa -3'
miRNA:   3'- aCAGCUAGCACU--GGCUGU-GCuGCAGg -5'
16267 3' -52.8 NC_004084.1 + 13800 0.73 0.522627
Target:  5'- gGUUGGUCGcGACCGAgGCGAuCGgCCc -3'
miRNA:   3'- aCAGCUAGCaCUGGCUgUGCU-GCaGG- -5'
16267 3' -52.8 NC_004084.1 + 31270 0.73 0.522627
Target:  5'- gGUCGAgcucgaaCGUGGCCGGuCGCGG-GUCCc -3'
miRNA:   3'- aCAGCUa------GCACUGGCU-GUGCUgCAGG- -5'
16267 3' -52.8 NC_004084.1 + 55199 0.73 0.522627
Target:  5'- cGcUGAUCGUGGCCGACACGGuacacCCg -3'
miRNA:   3'- aCaGCUAGCACUGGCUGUGCUgca--GG- -5'
16267 3' -52.8 NC_004084.1 + 36148 0.72 0.554342
Target:  5'- cGUUGccUCGacugGAUCGACGuCGACGUCCg -3'
miRNA:   3'- aCAGCu-AGCa---CUGGCUGU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 11661 0.72 0.554342
Target:  5'- cGUCGGUCGgcgacGACUacggcgagGACAgCGACGUCUa -3'
miRNA:   3'- aCAGCUAGCa----CUGG--------CUGU-GCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 49060 0.72 0.565044
Target:  5'- cGgaaGAUCGUGACCGu--CGACGUgCg -3'
miRNA:   3'- aCag-CUAGCACUGGCuguGCUGCAgG- -5'
16267 3' -52.8 NC_004084.1 + 12408 0.72 0.5866
Target:  5'- cGUagcgGAUCGUGACCGuCuucuCGcCGUCCa -3'
miRNA:   3'- aCAg---CUAGCACUGGCuGu---GCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 36458 0.72 0.597438
Target:  5'- gUGUCGAUCucGGCgGAgACGuCGUCCu -3'
miRNA:   3'- -ACAGCUAGcaCUGgCUgUGCuGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 21124 0.72 0.597438
Target:  5'- gGUCGAaCGUGGCCucccAgAgGACGUCCu -3'
miRNA:   3'- aCAGCUaGCACUGGc---UgUgCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 50407 0.71 0.608305
Target:  5'- aUGUCGAUCGUaccGGUCGACACGucggauuCGUUCu -3'
miRNA:   3'- -ACAGCUAGCA---CUGGCUGUGCu------GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.