miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16267 3' -52.8 NC_004084.1 + 12943 0.71 0.619193
Target:  5'- cGUCu-UCGUGACCGACGauACG-CCa -3'
miRNA:   3'- aCAGcuAGCACUGGCUGUgcUGCaGG- -5'
16267 3' -52.8 NC_004084.1 + 13800 0.73 0.522627
Target:  5'- gGUUGGUCGcGACCGAgGCGAuCGgCCc -3'
miRNA:   3'- aCAGCUAGCaCUGGCUgUGCU-GCaGG- -5'
16267 3' -52.8 NC_004084.1 + 14159 0.66 0.904497
Target:  5'- cGUCG-UCGUGAa-GGC-CGGuCGUCCc -3'
miRNA:   3'- aCAGCuAGCACUggCUGuGCU-GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 15104 0.69 0.768193
Target:  5'- cGUCGGU-GUGACCGuaGCGGuggaagcuCGUCCg -3'
miRNA:   3'- aCAGCUAgCACUGGCugUGCU--------GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 15733 0.67 0.825581
Target:  5'- cGUCGuUCGUGAgCGugAUGAUGa-- -3'
miRNA:   3'- aCAGCuAGCACUgGCugUGCUGCagg -5'
16267 3' -52.8 NC_004084.1 + 16629 0.76 0.368883
Target:  5'- gGUCGAUCGUGACgcccuCGuCGuCGACGUCg -3'
miRNA:   3'- aCAGCUAGCACUG-----GCuGU-GCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 16791 0.67 0.868029
Target:  5'- cGUCGAUguccCG-GACCGucgccuCGCGuuCGUCCu -3'
miRNA:   3'- aCAGCUA----GCaCUGGCu-----GUGCu-GCAGG- -5'
16267 3' -52.8 NC_004084.1 + 16857 0.67 0.868029
Target:  5'- cGUCGAUgaucgcaaGUGGgaucUCGAgCGCGGCGUCUg -3'
miRNA:   3'- aCAGCUAg-------CACU----GGCU-GUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 16915 0.69 0.74682
Target:  5'- aGgCGAUCGUGGCCGggugcgguucgGCaucggcgggcgucGCGACGUCg -3'
miRNA:   3'- aCaGCUAGCACUGGC-----------UG-------------UGCUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 17049 0.66 0.875059
Target:  5'- cGUCGAUgCgGUGACUGACgucgcaaGCGGUGUUCg -3'
miRNA:   3'- aCAGCUA-G-CACUGGCUG-------UGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 17454 0.71 0.619193
Target:  5'- cGUCcggGAUCGUcGACgGGaucaacucguuCGCGACGUCCg -3'
miRNA:   3'- aCAG---CUAGCA-CUGgCU-----------GUGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 18019 0.67 0.851718
Target:  5'- cGUCGA-CGgcGAgUGugAUGugGUCCg -3'
miRNA:   3'- aCAGCUaGCa-CUgGCugUGCugCAGG- -5'
16267 3' -52.8 NC_004084.1 + 18806 0.69 0.758084
Target:  5'- cGUCGAggaCGUcGCCGGC-C-ACGUCCa -3'
miRNA:   3'- aCAGCUa--GCAcUGGCUGuGcUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 18872 0.66 0.883379
Target:  5'- aGUCGAUCGcgcUGGCCauCACGAgGagaUCCu -3'
miRNA:   3'- aCAGCUAGC---ACUGGcuGUGCUgC---AGG- -5'
16267 3' -52.8 NC_004084.1 + 21124 0.72 0.597438
Target:  5'- gGUCGAaCGUGGCCucccAgAgGACGUCCu -3'
miRNA:   3'- aCAGCUaGCACUGGc---UgUgCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 22512 0.68 0.79765
Target:  5'- cGUCGA-CGcGGCCacuccaGCGgGACGUCCg -3'
miRNA:   3'- aCAGCUaGCaCUGGc-----UGUgCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 22565 0.66 0.904497
Target:  5'- aUGuUCGAcUCGgcguucGGCCGAU-CGGCGUCUg -3'
miRNA:   3'- -AC-AGCU-AGCa-----CUGGCUGuGCUGCAGG- -5'
16267 3' -52.8 NC_004084.1 + 23025 0.74 0.481495
Target:  5'- cGUCGGUCGUGAucuggagcuUCGACACugacggcaguGGCGUCg -3'
miRNA:   3'- aCAGCUAGCACU---------GGCUGUG----------CUGCAGg -5'
16267 3' -52.8 NC_004084.1 + 23063 0.66 0.875828
Target:  5'- cG-CGAUCGUcGCCGGCgacGCGACGa-- -3'
miRNA:   3'- aCaGCUAGCAcUGGCUG---UGCUGCagg -5'
16267 3' -52.8 NC_004084.1 + 23304 0.66 0.875828
Target:  5'- aG-CGAgcgCGUGACCGAgaGCG-CGUaCCa -3'
miRNA:   3'- aCaGCUa--GCACUGGCUg-UGCuGCA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.