Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16267 | 3' | -52.8 | NC_004084.1 | + | 56520 | 0.66 | 0.907134 |
Target: 5'- aUGUCGGUCGgccccauccccgacuUGGCgUGGCaguccaggagGCGACGUCg -3' miRNA: 3'- -ACAGCUAGC---------------ACUG-GCUG----------UGCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 16791 | 0.67 | 0.868029 |
Target: 5'- cGUCGAUguccCG-GACCGucgccuCGCGuuCGUCCu -3' miRNA: 3'- aCAGCUA----GCaCUGGCu-----GUGCu-GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 41421 | 0.67 | 0.857533 |
Target: 5'- cUGU-GAUCGUaccuacuaaagcugGGCCGACGCGAUcgagGUCUu -3' miRNA: 3'- -ACAgCUAGCA--------------CUGGCUGUGCUG----CAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 49013 | 1.12 | 0.001555 |
Target: 5'- gUGUCGAUCGUGACCGACACGACGUCCu -3' miRNA: 3'- -ACAGCUAGCACUGGCUGUGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 32038 | 0.66 | 0.903831 |
Target: 5'- cGUCGcGUC-UGACCagacGGCgauggauucgguuGCGGCGUCCa -3' miRNA: 3'- aCAGC-UAGcACUGG----CUG-------------UGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 27336 | 0.66 | 0.890677 |
Target: 5'- -uUCGAgggacgCGgugGGCCGG-ACGACGUCUc -3' miRNA: 3'- acAGCUa-----GCa--CUGGCUgUGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 8157 | 0.66 | 0.890677 |
Target: 5'- --cUGGUCGUG-CCGACcagcccgcuccaGCGACG-CCu -3' miRNA: 3'- acaGCUAGCACuGGCUG------------UGCUGCaGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 560 | 0.66 | 0.890677 |
Target: 5'- aGUCGAg-GUGACguuCGCGAUGUCg -3' miRNA: 3'- aCAGCUagCACUGgcuGUGCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 27058 | 0.66 | 0.883379 |
Target: 5'- gUGUCGAUCGcgcgaUGcUCGACGuCGACGacgaacugcUCCg -3' miRNA: 3'- -ACAGCUAGC-----ACuGGCUGU-GCUGC---------AGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 23304 | 0.66 | 0.875828 |
Target: 5'- aG-CGAgcgCGUGACCGAgaGCG-CGUaCCa -3' miRNA: 3'- aCaGCUa--GCACUGGCUg-UGCuGCA-GG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 6874 | 0.66 | 0.882635 |
Target: 5'- aGcCGGUCGUGgauGCCGAgguacgucgggauCGCGACcGUCUc -3' miRNA: 3'- aCaGCUAGCAC---UGGCU-------------GUGCUG-CAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 35885 | 0.66 | 0.883379 |
Target: 5'- -aUCGGUCGUcuucGGCCGGagGCGAuCGUCg -3' miRNA: 3'- acAGCUAGCA----CUGGCUg-UGCU-GCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 46480 | 0.66 | 0.904497 |
Target: 5'- -cUCGAUCGaguccucGCUGGuCGCGACGUCg -3' miRNA: 3'- acAGCUAGCac-----UGGCU-GUGCUGCAGg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 48312 | 0.66 | 0.875828 |
Target: 5'- aGUCGAgcagugcagUGUGAUCGuCGCGcccccuuCGUCCu -3' miRNA: 3'- aCAGCUa--------GCACUGGCuGUGCu------GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 14159 | 0.66 | 0.904497 |
Target: 5'- cGUCG-UCGUGAa-GGC-CGGuCGUCCc -3' miRNA: 3'- aCAGCuAGCACUggCUGuGCU-GCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 35129 | 0.66 | 0.890677 |
Target: 5'- uUGUCGAUCcUGGgCGu--CGAgGUCCu -3' miRNA: 3'- -ACAGCUAGcACUgGCuguGCUgCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 23063 | 0.66 | 0.875828 |
Target: 5'- cG-CGAUCGUcGCCGGCgacGCGACGa-- -3' miRNA: 3'- aCaGCUAGCAcUGGCUG---UGCUGCagg -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 38309 | 0.67 | 0.867236 |
Target: 5'- cGUCGAcgagCGUGACguCGAUAuCGACGgucgucuUCCg -3' miRNA: 3'- aCAGCUa---GCACUG--GCUGU-GCUGC-------AGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 22565 | 0.66 | 0.904497 |
Target: 5'- aUGuUCGAcUCGgcguucGGCCGAU-CGGCGUCUg -3' miRNA: 3'- -AC-AGCU-AGCa-----CUGGCUGuGCUGCAGG- -5' |
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16267 | 3' | -52.8 | NC_004084.1 | + | 8897 | 0.66 | 0.890677 |
Target: 5'- -cUCGAUCGUccguggaugccGACCGGaucgaguCGACGUaCCg -3' miRNA: 3'- acAGCUAGCA-----------CUGGCUgu-----GCUGCA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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