Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16267 | 5' | -54.5 | NC_004084.1 | + | 49079 | 0.66 | 0.791124 |
Target: 5'- aCGuGcGACGGU--CGGGAGAggucucgCGUGACUg -3' miRNA: 3'- -GC-C-CUGCCGuaGCCUUCUa------GCACUGG- -5' |
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16267 | 5' | -54.5 | NC_004084.1 | + | 53247 | 0.67 | 0.761534 |
Target: 5'- gCGGG-CGGuCGUCGacggcgacGAGAUCG-GGCCg -3' miRNA: 3'- -GCCCuGCC-GUAGCc-------UUCUAGCaCUGG- -5' |
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16267 | 5' | -54.5 | NC_004084.1 | + | 53276 | 0.66 | 0.781407 |
Target: 5'- aGGGACGaCGUCGGucgccacgccGAGGUUGUaucgacggucGGCCa -3' miRNA: 3'- gCCCUGCcGUAGCC----------UUCUAGCA----------CUGG- -5' |
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16267 | 5' | -54.5 | NC_004084.1 | + | 55962 | 0.66 | 0.80068 |
Target: 5'- cCGGGuacgACGGCGacgCGGAGGggC-UGAUCg -3' miRNA: 3'- -GCCC----UGCCGUa--GCCUUCuaGcACUGG- -5' |
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16267 | 5' | -54.5 | NC_004084.1 | + | 56616 | 0.66 | 0.810065 |
Target: 5'- cCGGu-CGGCGaguUCGccGGAUCGUGGCUc -3' miRNA: 3'- -GCCcuGCCGU---AGCcuUCUAGCACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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