Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16267 | 5' | -54.5 | NC_004084.1 | + | 53276 | 0.66 | 0.781407 |
|
Target: 5'- aGGGACGaCGUCGGucgccacgccGAGGUUGUaucgacggucGGCCa -3' miRNA: 3'- gCCCUGCcGUAGCC----------UUCUAGCA----------CUGG- -5' |
|||||||
| 16267 | 5' | -54.5 | NC_004084.1 | + | 49079 | 0.66 | 0.791124 |
|
Target: 5'- aCGuGcGACGGU--CGGGAGAggucucgCGUGACUg -3' miRNA: 3'- -GC-C-CUGCCGuaGCCUUCUa------GCACUGG- -5' |
|||||||
| 16267 | 5' | -54.5 | NC_004084.1 | + | 56616 | 0.66 | 0.810065 |
|
Target: 5'- cCGGu-CGGCGaguUCGccGGAUCGUGGCUc -3' miRNA: 3'- -GCCcuGCCGU---AGCcuUCUAGCACUGG- -5' |
|||||||
| 16267 | 5' | -54.5 | NC_004084.1 | + | 29027 | 0.66 | 0.820179 |
|
Target: 5'- uCGaGGGCGGCAUCaccuuccaGGAGGGacgcgggaucccgggCGUcGACCa -3' miRNA: 3'- -GC-CCUGCCGUAG--------CCUUCUa--------------GCA-CUGG- -5' |
|||||||
| 16267 | 5' | -54.5 | NC_004084.1 | + | 49048 | 1.13 | 0.000805 |
|
Target: 5'- aCGGGACGGCAUCGGAAGAUCGUGACCg -3' miRNA: 3'- -GCCCUGCCGUAGCCUUCUAGCACUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home