miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16270 3' -54.7 NC_004084.1 + 48433 1.1 0.001192
Target:  5'- uCGACGUCGUCGGCCAGUACGGUGAACa -3'
miRNA:   3'- -GCUGCAGCAGCCGGUCAUGCCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 57411 0.76 0.279925
Target:  5'- uCGACGUCGcCGGCgAGcucgaGGUGGACa -3'
miRNA:   3'- -GCUGCAGCaGCCGgUCaug--CCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 29589 0.75 0.286987
Target:  5'- gGGCGUCGuUCGcGCgCAGUucgAUGGUGAGCg -3'
miRNA:   3'- gCUGCAGC-AGC-CG-GUCA---UGCCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 18812 0.74 0.324398
Target:  5'- gGACGUCGcCGGCCAcGUccaggaggACGGUGGcGCg -3'
miRNA:   3'- gCUGCAGCaGCCGGU-CA--------UGCCACU-UG- -5'
16270 3' -54.7 NC_004084.1 + 28073 0.73 0.39153
Target:  5'- cCGACGcCGUCGGCCAccucgccgACGGUcAACg -3'
miRNA:   3'- -GCUGCaGCAGCCGGUca------UGCCAcUUG- -5'
16270 3' -54.7 NC_004084.1 + 18709 0.72 0.457223
Target:  5'- aCGGCGUCGUCgccgucacuGGCgGGUuCGGUcGAGCc -3'
miRNA:   3'- -GCUGCAGCAG---------CCGgUCAuGCCA-CUUG- -5'
16270 3' -54.7 NC_004084.1 + 48121 0.71 0.476055
Target:  5'- ---aGUUG-CGGCCGGUcgucgucACGGUGAGCa -3'
miRNA:   3'- gcugCAGCaGCCGGUCA-------UGCCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 56604 0.71 0.477057
Target:  5'- gCGGCGUCGUC-GCCGGU-CGGcGAGu -3'
miRNA:   3'- -GCUGCAGCAGcCGGUCAuGCCaCUUg -5'
16270 3' -54.7 NC_004084.1 + 29892 0.7 0.538897
Target:  5'- aGACGUCccCGGCCAcgcagaGGUGAACg -3'
miRNA:   3'- gCUGCAGcaGCCGGUcaug--CCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 18147 0.7 0.581606
Target:  5'- aCGACGUCGcCGGCgAGUggACGaUGGAg -3'
miRNA:   3'- -GCUGCAGCaGCCGgUCA--UGCcACUUg -5'
16270 3' -54.7 NC_004084.1 + 3174 0.7 0.581606
Target:  5'- aGACGUCGUcgaCGGCgAGgAC-GUGAACg -3'
miRNA:   3'- gCUGCAGCA---GCCGgUCaUGcCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 53309 0.69 0.603237
Target:  5'- uCGACG--GUCGGCCAGcugGCGGcccgccUGGGCa -3'
miRNA:   3'- -GCUGCagCAGCCGGUCa--UGCC------ACUUG- -5'
16270 3' -54.7 NC_004084.1 + 44342 0.69 0.614093
Target:  5'- uCGACGUcuaCGUCGGUC---GCGGUGAcaACg -3'
miRNA:   3'- -GCUGCA---GCAGCCGGucaUGCCACU--UG- -5'
16270 3' -54.7 NC_004084.1 + 6716 0.69 0.614093
Target:  5'- cCGGCGaUGUCcGuCCGGUACGG-GAACg -3'
miRNA:   3'- -GCUGCaGCAGcC-GGUCAUGCCaCUUG- -5'
16270 3' -54.7 NC_004084.1 + 23578 0.69 0.622789
Target:  5'- cCGcUGUCGUCGagaGCCAGaucgcgauggacGCGGUGAGCa -3'
miRNA:   3'- -GCuGCAGCAGC---CGGUCa-----------UGCCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 2047 0.69 0.624964
Target:  5'- uCGAUGUCGau-GCC-GUACGGUGGAUc -3'
miRNA:   3'- -GCUGCAGCagcCGGuCAUGCCACUUG- -5'
16270 3' -54.7 NC_004084.1 + 17564 0.68 0.646715
Target:  5'- uCGAUcUCGaCGGCCAGUuCGG-GGACc -3'
miRNA:   3'- -GCUGcAGCaGCCGGUCAuGCCaCUUG- -5'
16270 3' -54.7 NC_004084.1 + 31075 0.68 0.679219
Target:  5'- aGACGUCGUcCGGCCcaccGCGucccucgaacGUGAACg -3'
miRNA:   3'- gCUGCAGCA-GCCGGuca-UGC----------CACUUG- -5'
16270 3' -54.7 NC_004084.1 + 37688 0.68 0.689981
Target:  5'- uCGACGUCGUCGacaCCAGcaACGGgauccccGAACu -3'
miRNA:   3'- -GCUGCAGCAGCc--GGUCa-UGCCa------CUUG- -5'
16270 3' -54.7 NC_004084.1 + 45416 0.67 0.711329
Target:  5'- uCGAgGUCGUCGaucgaGCCGGauguCGGUGcGACa -3'
miRNA:   3'- -GCUgCAGCAGC-----CGGUCau--GCCAC-UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.