Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16270 | 3' | -54.7 | NC_004084.1 | + | 57411 | 0.76 | 0.279925 |
Target: 5'- uCGACGUCGcCGGCgAGcucgaGGUGGACa -3' miRNA: 3'- -GCUGCAGCaGCCGgUCaug--CCACUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 55563 | 0.66 | 0.802357 |
Target: 5'- gCGACGaacUCGUCGGCCuGUuCGGc---- -3' miRNA: 3'- -GCUGC---AGCAGCCGGuCAuGCCacuug -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 39787 | 0.66 | 0.783073 |
Target: 5'- gCGACGagGUCGGCCAacuCGGcGAc- -3' miRNA: 3'- -GCUGCagCAGCCGGUcauGCCaCUug -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 11657 | 0.67 | 0.732373 |
Target: 5'- uCGACGUCgGUCGGCgAcgacUACGGcgaGGACa -3' miRNA: 3'- -GCUGCAG-CAGCCGgUc---AUGCCa--CUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 54265 | 0.67 | 0.721895 |
Target: 5'- gCGACGUCaUCGGCC-GUcUGGUaAGCa -3' miRNA: 3'- -GCUGCAGcAGCCGGuCAuGCCAcUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 31075 | 0.68 | 0.679219 |
Target: 5'- aGACGUCGUcCGGCCcaccGCGucccucgaacGUGAACg -3' miRNA: 3'- gCUGCAGCA-GCCGGuca-UGC----------CACUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 23578 | 0.69 | 0.622789 |
Target: 5'- cCGcUGUCGUCGagaGCCAGaucgcgauggacGCGGUGAGCa -3' miRNA: 3'- -GCuGCAGCAGC---CGGUCa-----------UGCCACUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 44342 | 0.69 | 0.614093 |
Target: 5'- uCGACGUcuaCGUCGGUC---GCGGUGAcaACg -3' miRNA: 3'- -GCUGCA---GCAGCCGGucaUGCCACU--UG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 18147 | 0.7 | 0.581606 |
Target: 5'- aCGACGUCGcCGGCgAGUggACGaUGGAg -3' miRNA: 3'- -GCUGCAGCaGCCGgUCA--UGCcACUUg -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 3174 | 0.7 | 0.581606 |
Target: 5'- aGACGUCGUcgaCGGCgAGgAC-GUGAACg -3' miRNA: 3'- gCUGCAGCA---GCCGgUCaUGcCACUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 29892 | 0.7 | 0.538897 |
Target: 5'- aGACGUCccCGGCCAcgcagaGGUGAACg -3' miRNA: 3'- gCUGCAGcaGCCGGUcaug--CCACUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 28073 | 0.73 | 0.39153 |
Target: 5'- cCGACGcCGUCGGCCAccucgccgACGGUcAACg -3' miRNA: 3'- -GCUGCaGCAGCCGGUca------UGCCAcUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 29589 | 0.75 | 0.286987 |
Target: 5'- gGGCGUCGuUCGcGCgCAGUucgAUGGUGAGCg -3' miRNA: 3'- gCUGCAGC-AGC-CG-GUCA---UGCCACUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 37688 | 0.68 | 0.689981 |
Target: 5'- uCGACGUCGUCGacaCCAGcaACGGgauccccGAACu -3' miRNA: 3'- -GCUGCAGCAGCc--GGUCa-UGCCa------CUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 9941 | 0.67 | 0.711329 |
Target: 5'- aGACGUgCGUCGGCgGGU-CGGaGuAGCc -3' miRNA: 3'- gCUGCA-GCAGCCGgUCAuGCCaC-UUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 45416 | 0.67 | 0.711329 |
Target: 5'- uCGAgGUCGUCGaucgaGCCGGauguCGGUGcGACa -3' miRNA: 3'- -GCUgCAGCAGC-----CGGUCau--GCCAC-UUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 15100 | 0.67 | 0.721895 |
Target: 5'- --uCGUCGUCGGUguGaccguaGCGGUGGAa -3' miRNA: 3'- gcuGCAGCAGCCGguCa-----UGCCACUUg -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 4125 | 0.67 | 0.743786 |
Target: 5'- aCGACGUCGucuUCGGCCAGcagaaugcuuaccagACGGccGAugACg -3' miRNA: 3'- -GCUGCAGC---AGCCGGUCa--------------UGCCa-CU--UG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 16915 | 0.66 | 0.773195 |
Target: 5'- aGGCGaUCGU-GGCCGgGUGCGGUucggcaucggcGGGCg -3' miRNA: 3'- gCUGC-AGCAgCCGGU-CAUGCCA-----------CUUG- -5' |
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16270 | 3' | -54.7 | NC_004084.1 | + | 48433 | 1.1 | 0.001192 |
Target: 5'- uCGACGUCGUCGGCCAGUACGGUGAACa -3' miRNA: 3'- -GCUGCAGCAGCCGGUCAUGCCACUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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