Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16271 | 5' | -54.5 | NC_004084.1 | + | 10885 | 0.74 | 0.321448 |
Target: 5'- -gCCGGaUGAugGCGAUCGUCGGGUAc -3' miRNA: 3'- agGGUCaGCUugUGCUAGCGGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 50118 | 0.75 | 0.276787 |
Target: 5'- cUUCgAGUCGAGgccCGCGAUCGuCCGGAUGa -3' miRNA: 3'- -AGGgUCAGCUU---GUGCUAGC-GGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 56968 | 0.78 | 0.197164 |
Target: 5'- gUCCCAGUaGucCAgGAUCGCCGGGUAc -3' miRNA: 3'- -AGGGUCAgCuuGUgCUAGCGGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 18218 | 0.69 | 0.570183 |
Target: 5'- gUCCAGcUCGAGgugaACGAggUCGCCGGAg- -3' miRNA: 3'- aGGGUC-AGCUUg---UGCU--AGCGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 17696 | 0.68 | 0.657959 |
Target: 5'- -gCCAGUCGAcCACGAUCcaGCCuGAg- -3' miRNA: 3'- agGGUCAGCUuGUGCUAG--CGGcCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 5086 | 0.68 | 0.66235 |
Target: 5'- gUCCaccUCGAAgacgugaaccgagccCGCGAUCGCCGGGUc -3' miRNA: 3'- -AGGgucAGCUU---------------GUGCUAGCGGCCUAu -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 16104 | 0.66 | 0.773869 |
Target: 5'- gUCCCgacGGUCGu-CGCGAUCGUcgccgaucgugaaCGGGUGa -3' miRNA: 3'- -AGGG---UCAGCuuGUGCUAGCG-------------GCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 18862 | 0.66 | 0.744121 |
Target: 5'- gUCCCGGUCGAgu-CGAUCGCgcUGGc-- -3' miRNA: 3'- -AGGGUCAGCUuguGCUAGCG--GCCuau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 57451 | 0.67 | 0.733628 |
Target: 5'- gUCCCGGUggcacagcaGGAUGCGGUCcCCGGAg- -3' miRNA: 3'- -AGGGUCAg--------CUUGUGCUAGcGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 57116 | 0.67 | 0.733628 |
Target: 5'- aUCCAGUCGAGgACGuccucgguGUCGCCGu--- -3' miRNA: 3'- aGGGUCAGCUUgUGC--------UAGCGGCcuau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 8546 | 0.67 | 0.733628 |
Target: 5'- aCCCAucGUCccGCAgGAcUCGCCGGAUc -3' miRNA: 3'- aGGGU--CAGcuUGUgCU-AGCGGCCUAu -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 10661 | 0.67 | 0.712348 |
Target: 5'- gCCgAGUgcCGuuUGCGAUCGCCGGGc- -3' miRNA: 3'- aGGgUCA--GCuuGUGCUAGCGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 6421 | 0.68 | 0.684224 |
Target: 5'- cUCCCAGucccgcggcuucaguUCGAACGCccacuGGUCGCCGuGGa- -3' miRNA: 3'- -AGGGUC---------------AGCUUGUG-----CUAGCGGC-CUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 8371 | 0.68 | 0.679862 |
Target: 5'- aCCCGGUgagggaCGAGCAucuuCGAcuuUCGUCGGAUGu -3' miRNA: 3'- aGGGUCA------GCUUGU----GCU---AGCGGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 47382 | 1.07 | 0.001882 |
Target: 5'- cUCCCAGUCGAACACGAUCGCCGGAUAc -3' miRNA: 3'- -AGGGUCAGCUUGUGCUAGCGGCCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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