miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16271 5' -54.5 NC_004084.1 + 55392 0.76 0.24347
Target:  5'- aUCCCGGUaucgcCGAcauacucgGCAUGAUCGCCGGGg- -3'
miRNA:   3'- -AGGGUCA-----GCU--------UGUGCUAGCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 29566 0.66 0.784846
Target:  5'- -gCC-GUUGAGgGCcAUCGCCGGGUGg -3'
miRNA:   3'- agGGuCAGCUUgUGcUAGCGGCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 26802 0.66 0.774875
Target:  5'- cUCCCAGagcgaaUCGAGCGCGAga-UCGGAg- -3'
miRNA:   3'- -AGGGUC------AGCUUGUGCUagcGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 35469 0.66 0.764756
Target:  5'- aCCaggagcaGGUCGAGgcgGCGAUCGCCGaGAUc -3'
miRNA:   3'- aGGg------UCAGCUUg--UGCUAGCGGC-CUAu -5'
16271 5' -54.5 NC_004084.1 + 24013 0.66 0.764756
Target:  5'- cUCCCAGacggCGAuggACGCGGUUGCgGGc-- -3'
miRNA:   3'- -AGGGUCa---GCU---UGUGCUAGCGgCCuau -5'
16271 5' -54.5 NC_004084.1 + 43472 0.66 0.764756
Target:  5'- gUCCCGGaCGAGCAUcuUCaCCGGAUc -3'
miRNA:   3'- -AGGGUCaGCUUGUGcuAGcGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 2660 0.66 0.744121
Target:  5'- gUCCAGUCGAGCuCGuucgaGCCGGu-- -3'
miRNA:   3'- aGGGUCAGCUUGuGCuag--CGGCCuau -5'
16271 5' -54.5 NC_004084.1 + 9392 0.67 0.732573
Target:  5'- gUCCCGuccaggacgucguGUCGGuCACGAUCGacaCGGAc- -3'
miRNA:   3'- -AGGGU-------------CAGCUuGUGCUAGCg--GCCUau -5'
16271 5' -54.5 NC_004084.1 + 29074 0.67 0.723033
Target:  5'- gCCCGcUCGGGgGCGucGUCGCCGcGGUAg -3'
miRNA:   3'- aGGGUcAGCUUgUGC--UAGCGGC-CUAU- -5'
16271 5' -54.5 NC_004084.1 + 27128 0.69 0.58107
Target:  5'- cUCCCAGaUCGuauccAACGCGA-CGUCGGAc- -3'
miRNA:   3'- -AGGGUC-AGC-----UUGUGCUaGCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 44817 0.69 0.615048
Target:  5'- aCCCGGUCGGugACGGUaucgagcugaccgagGUCGGAUc -3'
miRNA:   3'- aGGGUCAGCUugUGCUAg--------------CGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 4597 0.68 0.624951
Target:  5'- uUCCCGGagGAACACGucuaCGgCGGAg- -3'
miRNA:   3'- -AGGGUCagCUUGUGCua--GCgGCCUau -5'
16271 5' -54.5 NC_004084.1 + 25626 0.68 0.635961
Target:  5'- aUCCCucGUCGAAgACGAucUCGCCGu--- -3'
miRNA:   3'- -AGGGu-CAGCUUgUGCU--AGCGGCcuau -5'
16271 5' -54.5 NC_004084.1 + 46677 0.68 0.668928
Target:  5'- gCCaCAGuccgcgauUCGAGCACG-UCGCCGGcgAc -3'
miRNA:   3'- aGG-GUC--------AGCUUGUGCuAGCGGCCuaU- -5'
16271 5' -54.5 NC_004084.1 + 46339 0.68 0.679862
Target:  5'- gCCgAGUCGuACgACGAUaUGCCGGAg- -3'
miRNA:   3'- aGGgUCAGCuUG-UGCUA-GCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 47382 1.07 0.001882
Target:  5'- cUCCCAGUCGAACACGAUCGCCGGAUAc -3'
miRNA:   3'- -AGGGUCAGCUUGUGCUAGCGGCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 18862 0.66 0.744121
Target:  5'- gUCCCGGUCGAgu-CGAUCGCgcUGGc-- -3'
miRNA:   3'- -AGGGUCAGCUuguGCUAGCG--GCCuau -5'
16271 5' -54.5 NC_004084.1 + 57451 0.67 0.733628
Target:  5'- gUCCCGGUggcacagcaGGAUGCGGUCcCCGGAg- -3'
miRNA:   3'- -AGGGUCAg--------CUUGUGCUAGcGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 57116 0.67 0.733628
Target:  5'- aUCCAGUCGAGgACGuccucgguGUCGCCGu--- -3'
miRNA:   3'- aGGGUCAGCUUgUGC--------UAGCGGCcuau -5'
16271 5' -54.5 NC_004084.1 + 8546 0.67 0.733628
Target:  5'- aCCCAucGUCccGCAgGAcUCGCCGGAUc -3'
miRNA:   3'- aGGGU--CAGcuUGUgCU-AGCGGCCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.