miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16271 5' -54.5 NC_004084.1 + 2660 0.66 0.744121
Target:  5'- gUCCAGUCGAGCuCGuucgaGCCGGu-- -3'
miRNA:   3'- aGGGUCAGCUUGuGCuag--CGGCCuau -5'
16271 5' -54.5 NC_004084.1 + 3452 0.7 0.516661
Target:  5'- -aCCuGUCGGAuCGCGAgCGCCGGGg- -3'
miRNA:   3'- agGGuCAGCUU-GUGCUaGCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 4597 0.68 0.624951
Target:  5'- uUCCCGGagGAACACGucuaCGgCGGAg- -3'
miRNA:   3'- -AGGGUCagCUUGUGCua--GCgGCCUau -5'
16271 5' -54.5 NC_004084.1 + 5086 0.68 0.66235
Target:  5'- gUCCaccUCGAAgacgugaaccgagccCGCGAUCGCCGGGUc -3'
miRNA:   3'- -AGGgucAGCUU---------------GUGCUAGCGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 6421 0.68 0.684224
Target:  5'- cUCCCAGucccgcggcuucaguUCGAACGCccacuGGUCGCCGuGGa- -3'
miRNA:   3'- -AGGGUC---------------AGCUUGUG-----CUAGCGGC-CUau -5'
16271 5' -54.5 NC_004084.1 + 8371 0.68 0.679862
Target:  5'- aCCCGGUgagggaCGAGCAucuuCGAcuuUCGUCGGAUGu -3'
miRNA:   3'- aGGGUCA------GCUUGU----GCU---AGCGGCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 8546 0.67 0.733628
Target:  5'- aCCCAucGUCccGCAgGAcUCGCCGGAUc -3'
miRNA:   3'- aGGGU--CAGcuUGUgCU-AGCGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 9392 0.67 0.732573
Target:  5'- gUCCCGuccaggacgucguGUCGGuCACGAUCGacaCGGAc- -3'
miRNA:   3'- -AGGGU-------------CAGCUuGUGCUAGCg--GCCUau -5'
16271 5' -54.5 NC_004084.1 + 10661 0.67 0.712348
Target:  5'- gCCgAGUgcCGuuUGCGAUCGCCGGGc- -3'
miRNA:   3'- aGGgUCA--GCuuGUGCUAGCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 10885 0.74 0.321448
Target:  5'- -gCCGGaUGAugGCGAUCGUCGGGUAc -3'
miRNA:   3'- agGGUCaGCUugUGCUAGCGGCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 14657 0.71 0.455307
Target:  5'- gCCCAGUCGAugccCGCGAgcgucccgGCCGGGUc -3'
miRNA:   3'- aGGGUCAGCUu---GUGCUag------CGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 16104 0.66 0.773869
Target:  5'- gUCCCgacGGUCGu-CGCGAUCGUcgccgaucgugaaCGGGUGa -3'
miRNA:   3'- -AGGG---UCAGCuuGUGCUAGCG-------------GCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 16851 0.72 0.445462
Target:  5'- gCUCA--CGGACGCGAUCGCCGGu-- -3'
miRNA:   3'- aGGGUcaGCUUGUGCUAGCGGCCuau -5'
16271 5' -54.5 NC_004084.1 + 17696 0.68 0.657959
Target:  5'- -gCCAGUCGAcCACGAUCcaGCCuGAg- -3'
miRNA:   3'- agGGUCAGCUuGUGCUAG--CGGcCUau -5'
16271 5' -54.5 NC_004084.1 + 18218 0.69 0.570183
Target:  5'- gUCCAGcUCGAGgugaACGAggUCGCCGGAg- -3'
miRNA:   3'- aGGGUC-AGCUUg---UGCU--AGCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 18862 0.66 0.744121
Target:  5'- gUCCCGGUCGAgu-CGAUCGCgcUGGc-- -3'
miRNA:   3'- -AGGGUCAGCUuguGCUAGCG--GCCuau -5'
16271 5' -54.5 NC_004084.1 + 23180 0.72 0.445462
Target:  5'- gUCCCAgagguggucgacGUCGAuCGCGAUCGUCGGc-- -3'
miRNA:   3'- -AGGGU------------CAGCUuGUGCUAGCGGCCuau -5'
16271 5' -54.5 NC_004084.1 + 24013 0.66 0.764756
Target:  5'- cUCCCAGacggCGAuggACGCGGUUGCgGGc-- -3'
miRNA:   3'- -AGGGUCa---GCU---UGUGCUAGCGgCCuau -5'
16271 5' -54.5 NC_004084.1 + 25626 0.68 0.635961
Target:  5'- aUCCCucGUCGAAgACGAucUCGCCGu--- -3'
miRNA:   3'- -AGGGu-CAGCUUgUGCU--AGCGGCcuau -5'
16271 5' -54.5 NC_004084.1 + 26802 0.66 0.774875
Target:  5'- cUCCCAGagcgaaUCGAGCGCGAga-UCGGAg- -3'
miRNA:   3'- -AGGGUC------AGCUUGUGCUagcGGCCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.