miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 906 0.68 0.754421
Target:  5'- uGUCGGCG-UCGUCGg-AGuUCGCUGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGUagUCcAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 17964 0.68 0.754421
Target:  5'- -gUGugGA-CGUCGUCGGuGUCGCCc- -3'
miRNA:   3'- caGCugCUaGUAGUAGUC-CAGCGGcg -5'
16274 5' -52.9 NC_004084.1 + 17918 0.68 0.754421
Target:  5'- --gGGCuGGUCccaccugcagGUCgAUCAGGUCGUCGCg -3'
miRNA:   3'- cagCUG-CUAG----------UAG-UAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16683 0.68 0.742946
Target:  5'- cGUCGuccCGAUCGUCAUCcgggacgaucugaAGGUCGaagaccgggaCGCg -3'
miRNA:   3'- -CAGCu--GCUAGUAGUAG-------------UCCAGCg---------GCG- -5'
16274 5' -52.9 NC_004084.1 + 53716 0.68 0.733455
Target:  5'- uGUCGAUGAUC-UCGUCGgcucGGUCcucgacgaGCUGCu -3'
miRNA:   3'- -CAGCUGCUAGuAGUAGU----CCAG--------CGGCG- -5'
16274 5' -52.9 NC_004084.1 + 15714 0.69 0.722813
Target:  5'- -aCGGUGAUCGcCGUCuGGUCGUCGUu -3'
miRNA:   3'- caGCUGCUAGUaGUAGuCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 26755 0.69 0.712079
Target:  5'- -cCGACGGcCAUCGagAGGUCGCgGa -3'
miRNA:   3'- caGCUGCUaGUAGUagUCCAGCGgCg -5'
16274 5' -52.9 NC_004084.1 + 9072 0.69 0.701266
Target:  5'- cGUCGACGAUCAccUCGaCAcGaUCGCCGa -3'
miRNA:   3'- -CAGCUGCUAGU--AGUaGUcC-AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 1980 0.69 0.701266
Target:  5'- cGUCGA-GAUCGUCGUUccgacGGU-GCCGCu -3'
miRNA:   3'- -CAGCUgCUAGUAGUAGu----CCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 28665 0.69 0.679448
Target:  5'- --gGACGGUCAUCGUC---UCGCCGg -3'
miRNA:   3'- cagCUGCUAGUAGUAGuccAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 54104 0.69 0.679448
Target:  5'- cUCGcaggaGGUCAcUCGcCAGGUCGCCGUc -3'
miRNA:   3'- cAGCug---CUAGU-AGUaGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 29426 0.7 0.668466
Target:  5'- aUCG-CGGUCAUCAggccgacgUC-GGUCGCgCGCu -3'
miRNA:   3'- cAGCuGCUAGUAGU--------AGuCCAGCG-GCG- -5'
16274 5' -52.9 NC_004084.1 + 10052 0.7 0.668466
Target:  5'- cGUUGACGAUC-UCGacCGGGaaccagcguugaUCGCCGCc -3'
miRNA:   3'- -CAGCUGCUAGuAGUa-GUCC------------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 36717 0.7 0.668466
Target:  5'- cGUCGACGGUCGccgaCGUCAGcugUGCuCGCa -3'
miRNA:   3'- -CAGCUGCUAGUa---GUAGUCca-GCG-GCG- -5'
16274 5' -52.9 NC_004084.1 + 2442 0.7 0.668466
Target:  5'- aUCGGCGAUCAgccCcUCcGcGUCGCCGUc -3'
miRNA:   3'- cAGCUGCUAGUa--GuAGuC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 18788 0.7 0.668466
Target:  5'- cGUCGcguACGAUCGacUCGUCgAGGaCGUCGCc -3'
miRNA:   3'- -CAGC---UGCUAGU--AGUAG-UCCaGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16514 0.7 0.657448
Target:  5'- --aGGCGAUCG-CGUCGccgcGGUCGUCGUg -3'
miRNA:   3'- cagCUGCUAGUaGUAGU----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 51169 0.7 0.650826
Target:  5'- --aGACGGUCGccgagcacgcgccgaUCGUCgAGGUCGgCGCu -3'
miRNA:   3'- cagCUGCUAGU---------------AGUAG-UCCAGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 47904 0.7 0.646407
Target:  5'- -gCGACGGUCGcUCcgCgAGGU-GCCGCg -3'
miRNA:   3'- caGCUGCUAGU-AGuaG-UCCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 51014 0.7 0.624296
Target:  5'- cGUCGuCGAUCGccuugcucagcUCGUCGaugcGGUCGCUGUu -3'
miRNA:   3'- -CAGCuGCUAGU-----------AGUAGU----CCAGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.