miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 16514 0.7 0.657448
Target:  5'- --aGGCGAUCG-CGUCGccgcGGUCGUCGUg -3'
miRNA:   3'- cagCUGCUAGUaGUAGU----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16650 0.66 0.849904
Target:  5'- cGUCGACG-UCGUC--CGGGagguccUCGUCGCc -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUCC------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16683 0.68 0.742946
Target:  5'- cGUCGuccCGAUCGUCAUCcgggacgaucugaAGGUCGaagaccgggaCGCg -3'
miRNA:   3'- -CAGCu--GCUAGUAGUAG-------------UCCAGCg---------GCG- -5'
16274 5' -52.9 NC_004084.1 + 17918 0.68 0.754421
Target:  5'- --gGGCuGGUCccaccugcagGUCgAUCAGGUCGUCGCg -3'
miRNA:   3'- cagCUG-CUAG----------UAG-UAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 17964 0.68 0.754421
Target:  5'- -gUGugGA-CGUCGUCGGuGUCGCCc- -3'
miRNA:   3'- caGCugCUaGUAGUAGUC-CAGCGGcg -5'
16274 5' -52.9 NC_004084.1 + 18704 0.67 0.803471
Target:  5'- cGUCGACGG-CGUCGUCgccgucacuggcGGGUUcggucgaGCCGUu -3'
miRNA:   3'- -CAGCUGCUaGUAGUAG------------UCCAG-------CGGCG- -5'
16274 5' -52.9 NC_004084.1 + 18788 0.7 0.668466
Target:  5'- cGUCGcguACGAUCGacUCGUCgAGGaCGUCGCc -3'
miRNA:   3'- -CAGC---UGCUAGU--AGUAG-UCCaGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 18854 0.67 0.813931
Target:  5'- cGUCGACGGUCccgGUCGaGUCGaUCGCg -3'
miRNA:   3'- -CAGCUGCUAGuagUAGUcCAGC-GGCG- -5'
16274 5' -52.9 NC_004084.1 + 20037 0.66 0.858343
Target:  5'- -aCGACGAUCGcgucUCGUCA-GUCGauGCu -3'
miRNA:   3'- caGCUGCUAGU----AGUAGUcCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 21074 0.73 0.474129
Target:  5'- uUCGAgcUGggCGUCGUCGGGaUCGCCGa -3'
miRNA:   3'- cAGCU--GCuaGUAGUAGUCC-AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 23118 0.67 0.811101
Target:  5'- -cCGACGAaCGUCAgCAGGcucucgcgcugacuUCGCCGa -3'
miRNA:   3'- caGCUGCUaGUAGUaGUCC--------------AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 26169 0.66 0.849904
Target:  5'- aGUCGACGAgaaCGUagucccaacgacCGUCGGcGUCGUCGa -3'
miRNA:   3'- -CAGCUGCUa--GUA------------GUAGUC-CAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 26483 0.66 0.858343
Target:  5'- -cCGGCGA-CGUUgaGUguGGUCGUCGUc -3'
miRNA:   3'- caGCUGCUaGUAG--UAguCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 26755 0.69 0.712079
Target:  5'- -cCGACGGcCAUCGagAGGUCGCgGa -3'
miRNA:   3'- caGCUGCUaGUAGUagUCCAGCGgCg -5'
16274 5' -52.9 NC_004084.1 + 28094 0.66 0.841234
Target:  5'- -cCGACGGUCAaCGguUCGGGgugCGCCu- -3'
miRNA:   3'- caGCUGCUAGUaGU--AGUCCa--GCGGcg -5'
16274 5' -52.9 NC_004084.1 + 28665 0.69 0.679448
Target:  5'- --gGACGGUCAUCGUC---UCGCCGg -3'
miRNA:   3'- cagCUGCUAGUAGUAGuccAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 29145 0.67 0.813931
Target:  5'- uGUCGGCGGUgcUgGUguGGUCG-CGCg -3'
miRNA:   3'- -CAGCUGCUAguAgUAguCCAGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 29223 0.68 0.783902
Target:  5'- cGUCGACG-UUGUUcgCGGGcgaguacUCGUCGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUCC-------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 29426 0.7 0.668466
Target:  5'- aUCG-CGGUCAUCAggccgacgUC-GGUCGCgCGCu -3'
miRNA:   3'- cAGCuGCUAGUAGU--------AGuCCAGCG-GCG- -5'
16274 5' -52.9 NC_004084.1 + 35696 0.72 0.536856
Target:  5'- --gGGCGGaCuUCGUCGGGUCGCuCGCc -3'
miRNA:   3'- cagCUGCUaGuAGUAGUCCAGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.