miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 764 0.65 0.879917
Target:  5'- uUCGACGAaguccguccacgauUCAUCGUCGcccuuguguuGGUCGagGCg -3'
miRNA:   3'- cAGCUGCU--------------AGUAGUAGU----------CCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 906 0.68 0.754421
Target:  5'- uGUCGGCG-UCGUCGg-AGuUCGCUGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGUagUCcAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 1412 0.66 0.858343
Target:  5'- -cCGGCGucgcCAUUcUCGGcGUCGCCGUc -3'
miRNA:   3'- caGCUGCua--GUAGuAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 1980 0.69 0.701266
Target:  5'- cGUCGA-GAUCGUCGUUccgacGGU-GCCGCu -3'
miRNA:   3'- -CAGCUgCUAGUAGUAGu----CCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 2442 0.7 0.668466
Target:  5'- aUCGGCGAUCAgccCcUCcGcGUCGCCGUc -3'
miRNA:   3'- cAGCUGCUAGUa--GuAGuC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 2524 0.78 0.261514
Target:  5'- -cCGGCgGAUCGUCGUCgcacGGGUgGCCGCu -3'
miRNA:   3'- caGCUG-CUAGUAGUAG----UCCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 4037 0.67 0.813931
Target:  5'- -aCGGCGAUCG-CGUCAGaGUgaucUGCCGa -3'
miRNA:   3'- caGCUGCUAGUaGUAGUC-CA----GCGGCg -5'
16274 5' -52.9 NC_004084.1 + 5563 0.73 0.484342
Target:  5'- aGUCGACG-UUGUCG--AGGUCGCCaGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGUagUCCAGCGG-CG- -5'
16274 5' -52.9 NC_004084.1 + 5761 0.67 0.79475
Target:  5'- -aCGACGAUCucCGUC---UCGCCGCa -3'
miRNA:   3'- caGCUGCUAGuaGUAGuccAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 7081 0.71 0.584617
Target:  5'- cGUCGACGAagAUCucgcgggcgcacucgAUCGccucGGUCGCCGUc -3'
miRNA:   3'- -CAGCUGCUagUAG---------------UAGU----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 9072 0.69 0.701266
Target:  5'- cGUCGACGAUCAccUCGaCAcGaUCGCCGa -3'
miRNA:   3'- -CAGCUGCUAGU--AGUaGUcC-AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 10041 0.66 0.841234
Target:  5'- cGUCGACGGUgAccUAUCAcGGUCGaUCGUa -3'
miRNA:   3'- -CAGCUGCUAgUa-GUAGU-CCAGC-GGCG- -5'
16274 5' -52.9 NC_004084.1 + 10052 0.7 0.668466
Target:  5'- cGUUGACGAUC-UCGacCGGGaaccagcguugaUCGCCGCc -3'
miRNA:   3'- -CAGCUGCUAGuAGUa-GUCC------------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 10386 0.76 0.335984
Target:  5'- uUCGACGucgagcucGUCGUCGUcCAGGUCGUCGa -3'
miRNA:   3'- cAGCUGC--------UAGUAGUA-GUCCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 10893 0.67 0.804431
Target:  5'- -aUGGCGAUCGUCGgguacucccgaUCGGGgaguUCGUCGUc -3'
miRNA:   3'- caGCUGCUAGUAGU-----------AGUCC----AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 13485 0.83 0.117086
Target:  5'- cGUCGACGAacgUCAUCGUCaccucagcuaggcgcGGGUCGUCGCc -3'
miRNA:   3'- -CAGCUGCU---AGUAGUAG---------------UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 14035 0.68 0.774883
Target:  5'- cUCGugGA-CAUCGguguUCAGGaggugucgcUCGCCGUu -3'
miRNA:   3'- cAGCugCUaGUAGU----AGUCC---------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 15714 0.69 0.722813
Target:  5'- -aCGGUGAUCGcCGUCuGGUCGUCGUu -3'
miRNA:   3'- caGCUGCUAGUaGUAGuCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16092 0.72 0.515583
Target:  5'- cUCGuCGAUC-UCGUCccgacGGUCGUCGCg -3'
miRNA:   3'- cAGCuGCUAGuAGUAGu----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16124 0.67 0.832342
Target:  5'- cGUCGcCGAUCGUgAaCGGGUgaCCGCg -3'
miRNA:   3'- -CAGCuGCUAGUAgUaGUCCAgcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.