miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 2524 0.78 0.261514
Target:  5'- -cCGGCgGAUCGUCGUCgcacGGGUgGCCGCu -3'
miRNA:   3'- caGCUG-CUAGUAGUAG----UCCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 48044 0.66 0.874499
Target:  5'- cUCGACG-UCGaacUCAUCcGGacggCGCUGCa -3'
miRNA:   3'- cAGCUGCuAGU---AGUAGuCCa---GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 58041 0.66 0.866544
Target:  5'- -gCGGCGA-CGUCccCGGGcUCGCgGCa -3'
miRNA:   3'- caGCUGCUaGUAGuaGUCC-AGCGgCG- -5'
16274 5' -52.9 NC_004084.1 + 20037 0.66 0.858343
Target:  5'- -aCGACGAUCGcgucUCGUCA-GUCGauGCu -3'
miRNA:   3'- caGCUGCUAGU----AGUAGUcCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 47536 0.66 0.858343
Target:  5'- -cCGACGAUCGccaUCAUCcggccaguggAGGagaCGCCGUu -3'
miRNA:   3'- caGCUGCUAGU---AGUAG----------UCCa--GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 28094 0.66 0.841234
Target:  5'- -cCGACGGUCAaCGguUCGGGgugCGCCu- -3'
miRNA:   3'- caGCUGCUAGUaGU--AGUCCa--GCGGcg -5'
16274 5' -52.9 NC_004084.1 + 10041 0.66 0.841234
Target:  5'- cGUCGACGGUgAccUAUCAcGGUCGaUCGUa -3'
miRNA:   3'- -CAGCUGCUAgUa-GUAGU-CCAGC-GGCG- -5'
16274 5' -52.9 NC_004084.1 + 36074 0.67 0.813931
Target:  5'- -aCGACGAggaCcgCGaCgAGGUCGCCGUc -3'
miRNA:   3'- caGCUGCUa--GuaGUaG-UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 29145 0.67 0.813931
Target:  5'- uGUCGGCGGUgcUgGUguGGUCG-CGCg -3'
miRNA:   3'- -CAGCUGCUAguAgUAguCCAGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 29223 0.68 0.783902
Target:  5'- cGUCGACG-UUGUUcgCGGGcgaguacUCGUCGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUCC-------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 26755 0.69 0.712079
Target:  5'- -cCGACGGcCAUCGagAGGUCGCgGa -3'
miRNA:   3'- caGCUGCUaGUAGUagUCCAGCGgCg -5'
16274 5' -52.9 NC_004084.1 + 41082 0.71 0.575855
Target:  5'- cGUCGACGAgacgaugCGGGccgUCGCCGCg -3'
miRNA:   3'- -CAGCUGCUaguaguaGUCC---AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 47904 0.7 0.646407
Target:  5'- -gCGACGGUCGcUCcgCgAGGU-GCCGCg -3'
miRNA:   3'- caGCUGCUAGU-AGuaG-UCCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 51169 0.7 0.650826
Target:  5'- --aGACGGUCGccgagcacgcgccgaUCGUCgAGGUCGgCGCu -3'
miRNA:   3'- cagCUGCUAGU---------------AGUAG-UCCAGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 29426 0.7 0.668466
Target:  5'- aUCG-CGGUCAUCAggccgacgUC-GGUCGCgCGCu -3'
miRNA:   3'- cAGCuGCUAGUAGU--------AGuCCAGCG-GCG- -5'
16274 5' -52.9 NC_004084.1 + 28665 0.69 0.679448
Target:  5'- --gGACGGUCAUCGUC---UCGCCGg -3'
miRNA:   3'- cagCUGCUAGUAGUAGuccAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 54104 0.69 0.679448
Target:  5'- cUCGcaggaGGUCAcUCGcCAGGUCGCCGUc -3'
miRNA:   3'- cAGCug---CUAGU-AGUaGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 9072 0.69 0.701266
Target:  5'- cGUCGACGAUCAccUCGaCAcGaUCGCCGa -3'
miRNA:   3'- -CAGCUGCUAGU--AGUaGUcC-AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 46218 1.12 0.001275
Target:  5'- cGUCGACGAUCAUCAUCAGGUCGCCGCu -3'
miRNA:   3'- -CAGCUGCUAGUAGUAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 37196 0.66 0.866544
Target:  5'- -aCGAUG-UCGUCAcCGGcuUCGCCGCc -3'
miRNA:   3'- caGCUGCuAGUAGUaGUCc-AGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.