miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 46218 1.12 0.001275
Target:  5'- cGUCGACGAUCAUCAUCAGGUCGCCGCu -3'
miRNA:   3'- -CAGCUGCUAGUAGUAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 58128 0.84 0.10336
Target:  5'- cGUCGGCGGUCGUCGUCGaGcCGCCGUg -3'
miRNA:   3'- -CAGCUGCUAGUAGUAGUcCaGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 13485 0.83 0.117086
Target:  5'- cGUCGACGAacgUCAUCGUCaccucagcuaggcgcGGGUCGUCGCc -3'
miRNA:   3'- -CAGCUGCU---AGUAGUAG---------------UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 2524 0.78 0.261514
Target:  5'- -cCGGCgGAUCGUCGUCgcacGGGUgGCCGCu -3'
miRNA:   3'- caGCUG-CUAGUAGUAG----UCCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 58075 0.78 0.268313
Target:  5'- uUCGACGG-CGUUGUCGuugccguccuGGUCGCCGCg -3'
miRNA:   3'- cAGCUGCUaGUAGUAGU----------CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 10386 0.76 0.335984
Target:  5'- uUCGACGucgagcucGUCGUCGUcCAGGUCGUCGa -3'
miRNA:   3'- cAGCUGC--------UAGUAGUA-GUCCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 50627 0.76 0.344229
Target:  5'- cGUCGACGGUCAgagcguucuuuUCAgugaugcgacUCAGGUCGuuGUu -3'
miRNA:   3'- -CAGCUGCUAGU-----------AGU----------AGUCCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 57120 0.74 0.405927
Target:  5'- aGUCGAgGA-CGUCcUCGGuGUCGCCGUc -3'
miRNA:   3'- -CAGCUgCUaGUAGuAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 52938 0.74 0.415292
Target:  5'- -gCGACGAUCuggcCGUCGGcGUCGUCGUg -3'
miRNA:   3'- caGCUGCUAGua--GUAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 21074 0.73 0.474129
Target:  5'- uUCGAgcUGggCGUCGUCGGGaUCGCCGa -3'
miRNA:   3'- cAGCU--GCuaGUAGUAGUCC-AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 5563 0.73 0.484342
Target:  5'- aGUCGACG-UUGUCG--AGGUCGCCaGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGUagUCCAGCGG-CG- -5'
16274 5' -52.9 NC_004084.1 + 42041 0.73 0.494659
Target:  5'- gGUCGAC-AUCGUCAUUAGGgucugugCGCCa- -3'
miRNA:   3'- -CAGCUGcUAGUAGUAGUCCa------GCGGcg -5'
16274 5' -52.9 NC_004084.1 + 39046 0.73 0.494659
Target:  5'- gGUCGauGCGAUCGggacguugucgaUCAgCAGGUCGCUGUc -3'
miRNA:   3'- -CAGC--UGCUAGU------------AGUaGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16092 0.72 0.515583
Target:  5'- cUCGuCGAUC-UCGUCccgacGGUCGUCGCg -3'
miRNA:   3'- cAGCuGCUAGuAGUAGu----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 54600 0.72 0.536856
Target:  5'- cGUCGACGAagAcuggAUCgAGGUCGCCGUu -3'
miRNA:   3'- -CAGCUGCUagUag--UAG-UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 35696 0.72 0.536856
Target:  5'- --gGGCGGaCuUCGUCGGGUCGCuCGCc -3'
miRNA:   3'- cagCUGCUaGuAGUAGUCCAGCG-GCG- -5'
16274 5' -52.9 NC_004084.1 + 41082 0.71 0.575855
Target:  5'- cGUCGACGAgacgaugCGGGccgUCGCCGCg -3'
miRNA:   3'- -CAGCUGCUaguaguaGUCC---AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 7081 0.71 0.584617
Target:  5'- cGUCGACGAagAUCucgcgggcgcacucgAUCGccucGGUCGCCGUc -3'
miRNA:   3'- -CAGCUGCUagUAG---------------UAGU----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 38331 0.71 0.591206
Target:  5'- aUCGACGGUCGUCuUCcGGuUCGCUccgGCg -3'
miRNA:   3'- cAGCUGCUAGUAGuAGuCC-AGCGG---CG- -5'
16274 5' -52.9 NC_004084.1 + 37934 0.71 0.595605
Target:  5'- cGUCGGCGGgaUCGUCGcguuugaagacgacuUCGccGGUCGCCGa -3'
miRNA:   3'- -CAGCUGCU--AGUAGU---------------AGU--CCAGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.