miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 46190 0.68 0.90478
Target:  5'- uGGUagGCGGcgAGAuCGUCGUCGgaugCGUCGa -3'
miRNA:   3'- -CCAg-UGCU--UCU-GCAGCAGUa---GCAGCg -5'
16276 5' -50.5 NC_004084.1 + 19731 0.68 0.90478
Target:  5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3'
miRNA:   3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 52655 0.68 0.897919
Target:  5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3'
miRNA:   3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5'
16276 5' -50.5 NC_004084.1 + 34696 0.68 0.897919
Target:  5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3'
miRNA:   3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 47989 0.68 0.890788
Target:  5'- cGGgaugCACGAGGACGUCGacugCGagaUgGUCGa -3'
miRNA:   3'- -CCa---GUGCUUCUGCAGCa---GU---AgCAGCg -5'
16276 5' -50.5 NC_004084.1 + 762 0.68 0.890788
Target:  5'- cGUUcgACGAAGucCGUCcacgauUCAUCGUCGCc -3'
miRNA:   3'- cCAG--UGCUUCu-GCAGc-----AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 15709 0.69 0.883392
Target:  5'- cGGUgACGguGAuCGcCGUCugGUCGUCGUu -3'
miRNA:   3'- -CCAgUGCuuCU-GCaGCAG--UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56937 0.69 0.883392
Target:  5'- cGUCuACcAGGAgGUCGUCgAUCGcCGCa -3'
miRNA:   3'- cCAG-UGcUUCUgCAGCAG-UAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 23361 0.69 0.875737
Target:  5'- gGGUCgACGucGACGuUCGgaucCGUCGCg -3'
miRNA:   3'- -CCAG-UGCuuCUGC-AGCaguaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56922 0.69 0.875737
Target:  5'- cGUCGgGAcggcGGACuucguaGUCGUCGUCGgCGCu -3'
miRNA:   3'- cCAGUgCU----UCUG------CAGCAGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 22335 0.69 0.875737
Target:  5'- aGGagACGgcGACcUCGUCGcgguccUCGUCGUa -3'
miRNA:   3'- -CCagUGCuuCUGcAGCAGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 26121 0.69 0.867828
Target:  5'- cGGUCGCGAcGAuCG-CGUUGUCGgugaGCa -3'
miRNA:   3'- -CCAGUGCUuCU-GCaGCAGUAGCag--CG- -5'
16276 5' -50.5 NC_004084.1 + 31343 0.69 0.867828
Target:  5'- cGUCGCGAuGGCgGUCGgaaaguUCGUUGCu -3'
miRNA:   3'- cCAGUGCUuCUG-CAGCagu---AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16667 0.69 0.851276
Target:  5'- aGGUCcucguCGccGGCGUCGUCccgAUCGUCa- -3'
miRNA:   3'- -CCAGu----GCuuCUGCAGCAG---UAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 27972 0.69 0.851276
Target:  5'- cGUCcccaGCG-GGACGUCGUCcUCGccaUCGCu -3'
miRNA:   3'- cCAG----UGCuUCUGCAGCAGuAGC---AGCG- -5'
16276 5' -50.5 NC_004084.1 + 32412 0.7 0.842649
Target:  5'- cGGUCcCGucGACGagcUCG-CAcUCGUCGCg -3'
miRNA:   3'- -CCAGuGCuuCUGC---AGCaGU-AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 9532 0.7 0.842649
Target:  5'- -aUCGCcucGcCGUCGUgCAUCGUCGCg -3'
miRNA:   3'- ccAGUGcuuCuGCAGCA-GUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 14162 0.7 0.833798
Target:  5'- cGUCGUGAAGGCcgGUCGUCc-CGUCGUa -3'
miRNA:   3'- cCAGUGCUUCUG--CAGCAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 11001 0.7 0.833798
Target:  5'- uGUCGCc--GACGUCcuucggcuUCGUCGUCGCg -3'
miRNA:   3'- cCAGUGcuuCUGCAGc-------AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 14265 0.7 0.833798
Target:  5'- cGGgacCAgGuGGAgGUCcUCGUCGUCGCg -3'
miRNA:   3'- -CCa--GUgCuUCUgCAGcAGUAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.