miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 13767 0.67 0.932794
Target:  5'- aGGUCGCGcuGGGCGggcucggagaucgCGUCcgguUgGUCGCg -3'
miRNA:   3'- -CCAGUGCu-UCUGCa------------GCAGu---AgCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 14078 0.72 0.712842
Target:  5'- --cCGCGAccgacguAGACGUCGaugUCGUCGUgGCg -3'
miRNA:   3'- ccaGUGCU-------UCUGCAGC---AGUAGCAgCG- -5'
16276 5' -50.5 NC_004084.1 + 14162 0.7 0.833798
Target:  5'- cGUCGUGAAGGCcgGUCGUCc-CGUCGUa -3'
miRNA:   3'- cCAGUGCUUCUG--CAGCAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 14265 0.7 0.833798
Target:  5'- cGGgacCAgGuGGAgGUCcUCGUCGUCGCg -3'
miRNA:   3'- -CCa--GUgCuUCUgCAGcAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 15709 0.69 0.883392
Target:  5'- cGGUgACGguGAuCGcCGUCugGUCGUCGUu -3'
miRNA:   3'- -CCAgUGCuuCU-GCaGCAG--UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 15759 0.75 0.549566
Target:  5'- -cUCGgGAGGACGUCGUCGgacugCGcCGCc -3'
miRNA:   3'- ccAGUgCUUCUGCAGCAGUa----GCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 16103 0.66 0.949727
Target:  5'- cGUCcCGAcGGuCGUCGcgAUCGUCGCc -3'
miRNA:   3'- cCAGuGCU-UCuGCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16127 0.72 0.736304
Target:  5'- cGagACGAAGACGgugauggacgaacugCG-CGUCGUCGCg -3'
miRNA:   3'- cCagUGCUUCUGCa--------------GCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16667 0.69 0.851276
Target:  5'- aGGUCcucguCGccGGCGUCGUCccgAUCGUCa- -3'
miRNA:   3'- -CCAGu----GCuuCUGCAGCAG---UAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 17227 0.71 0.796359
Target:  5'- cGUCGCG--GGCGUCGUguUCGUCccaGCu -3'
miRNA:   3'- cCAGUGCuuCUGCAGCAguAGCAG---CG- -5'
16276 5' -50.5 NC_004084.1 + 17948 0.79 0.359393
Target:  5'- cGUCGCGuucgaggccguguGGACGUCGUCggUGUCGCc -3'
miRNA:   3'- cCAGUGCu------------UCUGCAGCAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 18695 0.67 0.92891
Target:  5'- cGUCAuccucguCGAcGGCGUCGUCGcCGUCa- -3'
miRNA:   3'- cCAGU-------GCUuCUGCAGCAGUaGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 19731 0.68 0.90478
Target:  5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3'
miRNA:   3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 19973 0.66 0.954108
Target:  5'- uGGU--UGAcGACGUCGaCGUCG-CGCg -3'
miRNA:   3'- -CCAguGCUuCUGCAGCaGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 21241 0.67 0.940152
Target:  5'- cGGUCuucuCGAuGAUGUCGaaCGccccgagcUCGUCGCg -3'
miRNA:   3'- -CCAGu---GCUuCUGCAGCa-GU--------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 22335 0.69 0.875737
Target:  5'- aGGagACGgcGACcUCGUCGcgguccUCGUCGUa -3'
miRNA:   3'- -CCagUGCuuCUGcAGCAGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 23175 0.77 0.465909
Target:  5'- uGGUCGucccaGAGGugGUCGaCGUCGaUCGCg -3'
miRNA:   3'- -CCAGUg----CUUCugCAGCaGUAGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 23361 0.69 0.875737
Target:  5'- gGGUCgACGucGACGuUCGgaucCGUCGCg -3'
miRNA:   3'- -CCAG-UGCuuCUGC-AGCaguaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 23598 0.66 0.949727
Target:  5'- -aUCGCGAuGGACG-CGgugagCA-CGUCGCa -3'
miRNA:   3'- ccAGUGCU-UCUGCaGCa----GUaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 25800 0.72 0.724629
Target:  5'- aGGUgGCGAGcGACGUCGagGUagacugacuccaUGUCGCa -3'
miRNA:   3'- -CCAgUGCUU-CUGCAGCagUA------------GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.