miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 404 0.75 0.53881
Target:  5'- uGUCGC--AGACGUCGUCGaucuggaCGUCGCa -3'
miRNA:   3'- cCAGUGcuUCUGCAGCAGUa------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 762 0.68 0.890788
Target:  5'- cGUUcgACGAAGucCGUCcacgauUCAUCGUCGCc -3'
miRNA:   3'- cCAG--UGCUUCu-GCAGc-----AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 869 0.68 0.90478
Target:  5'- aGUCAguCGucGACGUCGcCGUCGgaaucgguaUCGCu -3'
miRNA:   3'- cCAGU--GCuuCUGCAGCaGUAGC---------AGCG- -5'
16276 5' -50.5 NC_004084.1 + 1356 0.67 0.945076
Target:  5'- --cCACGGgcGGAcCGUCGUgAUCGggaCGCg -3'
miRNA:   3'- ccaGUGCU--UCU-GCAGCAgUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 1956 0.72 0.713918
Target:  5'- cGUCACgGAAGAccgagagcgcgcCGUCGagAUCGUCGUu -3'
miRNA:   3'- cCAGUG-CUUCU------------GCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 2566 0.72 0.713918
Target:  5'- --cCGCGAAGACGUCcG-CGUCGUUGa -3'
miRNA:   3'- ccaGUGCUUCUGCAG-CaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 4496 0.67 0.944596
Target:  5'- --aCACGAaacugcaGGAUGUCGagAUCGccUCGCa -3'
miRNA:   3'- ccaGUGCU-------UCUGCAGCagUAGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 5142 0.77 0.446017
Target:  5'- uGGUCGCcAGGACGUCGcccggcccgaUC-UCGUCGCc -3'
miRNA:   3'- -CCAGUGcUUCUGCAGC----------AGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 5473 0.68 0.911369
Target:  5'- -aUCACGAcGACGcCGaCGgccagaUCGUCGCa -3'
miRNA:   3'- ccAGUGCUuCUGCaGCaGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 5552 0.71 0.77656
Target:  5'- cGGaaGCGAuaagucGACGUUGUCGagGUCGCc -3'
miRNA:   3'- -CCagUGCUu-----CUGCAGCAGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 7174 0.66 0.958224
Target:  5'- cGGUCgcaGCGAuccGGACGUCGagCugcUCGaCGCa -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCa-Gu--AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 7476 0.66 0.958224
Target:  5'- cGUCGaggaGGAGAUcaggGUCGUCGaCGUCGa -3'
miRNA:   3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 8229 0.67 0.940152
Target:  5'- cGGUUGCaGAGGGCGaCGUCGagacgaUCGaCGCc -3'
miRNA:   3'- -CCAGUG-CUUCUGCaGCAGU------AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 9255 0.67 0.940152
Target:  5'- cGUCuCGggGuCGUCGuUCGUgaacgcaucgaaCGUCGCc -3'
miRNA:   3'- cCAGuGCuuCuGCAGC-AGUA------------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 9532 0.7 0.842649
Target:  5'- -aUCGCcucGcCGUCGUgCAUCGUCGCg -3'
miRNA:   3'- ccAGUGcuuCuGCAGCA-GUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 10374 0.71 0.765408
Target:  5'- cGUC-CGGAugaguucGACGUCGagcUCGUCGUCGUc -3'
miRNA:   3'- cCAGuGCUU-------CUGCAGC---AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 11001 0.7 0.833798
Target:  5'- uGUCGCc--GACGUCcuucggcuUCGUCGUCGCg -3'
miRNA:   3'- cCAGUGcuuCUGCAGc-------AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 11380 0.66 0.96568
Target:  5'- aGUC-CGGGcacuccccGGCaUCGUCAUCGaUCGCg -3'
miRNA:   3'- cCAGuGCUU--------CUGcAGCAGUAGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 11718 0.71 0.786541
Target:  5'- cGUCGCGGuAGACGUCGcCGgcgacgugcUCGaaUCGCg -3'
miRNA:   3'- cCAGUGCU-UCUGCAGCaGU---------AGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 13330 0.66 0.954108
Target:  5'- cGGagACGAucAUGUCGuUCAUCG-CGCc -3'
miRNA:   3'- -CCagUGCUucUGCAGC-AGUAGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.