miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 45486 1.15 0.00202
Target:  5'- cGGUCACGAAGACGUCGUCAUCGUCGCc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGCAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 50152 0.82 0.236995
Target:  5'- aGGUCGuuguCGAGGAUGUCGUCAgcggCGUCGa -3'
miRNA:   3'- -CCAGU----GCUUCUGCAGCAGUa---GCAGCg -5'
16276 5' -50.5 NC_004084.1 + 54826 0.8 0.3215
Target:  5'- cGUCugGAGGACGuUCGUCGcgGUCGCc -3'
miRNA:   3'- cCAGugCUUCUGC-AGCAGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 17948 0.79 0.359393
Target:  5'- cGUCGCGuucgaggccguguGGACGUCGUCggUGUCGCc -3'
miRNA:   3'- cCAGUGCu------------UCUGCAGCAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 38850 0.79 0.362832
Target:  5'- uGGUCugG--GACGUCGUCcUCGUCGa -3'
miRNA:   3'- -CCAGugCuuCUGCAGCAGuAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 44933 0.79 0.370653
Target:  5'- aGGUgACGAuGACGuUCGUCGacgagaacggcguUCGUCGCg -3'
miRNA:   3'- -CCAgUGCUuCUGC-AGCAGU-------------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 5142 0.77 0.446017
Target:  5'- uGGUCGCcAGGACGUCGcccggcccgaUC-UCGUCGCc -3'
miRNA:   3'- -CCAGUGcUUCUGCAGC----------AGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 23175 0.77 0.465909
Target:  5'- uGGUCGucccaGAGGugGUCGaCGUCGaUCGCg -3'
miRNA:   3'- -CCAGUg----CUUCugCAGCaGUAGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 37908 0.77 0.465909
Target:  5'- cGGUCucuucguCGAucuGAUGUCGUCGucggcgggaUCGUCGCg -3'
miRNA:   3'- -CCAGu------GCUu--CUGCAGCAGU---------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 49805 0.77 0.465909
Target:  5'- -aUCGCGAAGuCGUCGUCGcCG-CGCa -3'
miRNA:   3'- ccAGUGCUUCuGCAGCAGUaGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 30914 0.76 0.507005
Target:  5'- uGGUccucCugGAAGACGUCGaUCGcUCGUCGa -3'
miRNA:   3'- -CCA----GugCUUCUGCAGC-AGU-AGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 52947 0.76 0.507005
Target:  5'- uGG-C-CGucGGCGUCGUCGugaUCGUCGCg -3'
miRNA:   3'- -CCaGuGCuuCUGCAGCAGU---AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 404 0.75 0.53881
Target:  5'- uGUCGC--AGACGUCGUCGaucuggaCGUCGCa -3'
miRNA:   3'- cCAGUGcuUCUGCAGCAGUa------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 15759 0.75 0.549566
Target:  5'- -cUCGgGAGGACGUCGUCGgacugCGcCGCc -3'
miRNA:   3'- ccAGUgCUUCUGCAGCAGUa----GCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 26447 0.75 0.560388
Target:  5'- -aUCACGAGGACGUCGUUcccgagcugGUUGagCGCg -3'
miRNA:   3'- ccAGUGCUUCUGCAGCAG---------UAGCa-GCG- -5'
16276 5' -50.5 NC_004084.1 + 35404 0.74 0.604174
Target:  5'- -aUCACGAccGACGg-GUCAUCGUCGUc -3'
miRNA:   3'- ccAGUGCUu-CUGCagCAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56554 0.74 0.626247
Target:  5'- aGUC-CaGGAGGCGaCGUCGUCcGUCGCg -3'
miRNA:   3'- cCAGuG-CUUCUGCaGCAGUAG-CAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35887 0.74 0.637297
Target:  5'- cGGUCGucuucggcCGGAGGCGaUCGUCGUCGaggaugaCGCg -3'
miRNA:   3'- -CCAGU--------GCUUCUGC-AGCAGUAGCa------GCG- -5'
16276 5' -50.5 NC_004084.1 + 33258 0.73 0.648341
Target:  5'- aGGaCGuCGAGGACGUCGUCAgcUCGUUc- -3'
miRNA:   3'- -CCaGU-GCUUCUGCAGCAGU--AGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 42026 0.73 0.670375
Target:  5'- cGUCGCGAgcgAGGCgGUCGaCAUCGUCa- -3'
miRNA:   3'- cCAGUGCU---UCUG-CAGCaGUAGCAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.