miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 31349 0.67 0.929474
Target:  5'- -uUCGuCGucGACGUCGagCAUCG-CGCg -3'
miRNA:   3'- ccAGU-GCuuCUGCAGCa-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 34696 0.68 0.897919
Target:  5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3'
miRNA:   3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 52655 0.68 0.897919
Target:  5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3'
miRNA:   3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5'
16276 5' -50.5 NC_004084.1 + 19731 0.68 0.90478
Target:  5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3'
miRNA:   3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 5473 0.68 0.911369
Target:  5'- -aUCACGAcGACGcCGaCGgccagaUCGUCGCa -3'
miRNA:   3'- ccAGUGCUuCUGCaGCaGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 29063 0.68 0.917681
Target:  5'- aGGcCGCGAccgcccgcucGGGgG-CGUCGUCGcCGCg -3'
miRNA:   3'- -CCaGUGCU----------UCUgCaGCAGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 29696 0.68 0.920129
Target:  5'- cGGUCGCGGacgcuguccuggcugAGucGCGUCGUCuggcCGUcCGCc -3'
miRNA:   3'- -CCAGUGCU---------------UC--UGCAGCAGua--GCA-GCG- -5'
16276 5' -50.5 NC_004084.1 + 29220 0.67 0.923717
Target:  5'- --gCGCGucGACGUUGuUCGcgggcgaguacUCGUCGCg -3'
miRNA:   3'- ccaGUGCuuCUGCAGC-AGU-----------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 26678 0.67 0.923717
Target:  5'- cGGUCugaGAGGAgG-CGaCAUCGUCGa -3'
miRNA:   3'- -CCAGug-CUUCUgCaGCaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 47989 0.68 0.890788
Target:  5'- cGGgaugCACGAGGACGUCGacugCGagaUgGUCGa -3'
miRNA:   3'- -CCa---GUGCUUCUGCAGCa---GU---AgCAGCg -5'
16276 5' -50.5 NC_004084.1 + 56937 0.69 0.883392
Target:  5'- cGUCuACcAGGAgGUCGUCgAUCGcCGCa -3'
miRNA:   3'- cCAG-UGcUUCUgCAGCAG-UAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 32412 0.7 0.842649
Target:  5'- cGGUCcCGucGACGagcUCG-CAcUCGUCGCg -3'
miRNA:   3'- -CCAGuGCuuCUGC---AGCaGU-AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 2566 0.72 0.713918
Target:  5'- --cCGCGAAGACGUCcG-CGUCGUUGa -3'
miRNA:   3'- ccaGUGCUUCUGCAG-CaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 39260 0.72 0.724629
Target:  5'- cGG-CGgGAagauGGugGUCGUCGaucgCGUCGCg -3'
miRNA:   3'- -CCaGUgCU----UCugCAGCAGUa---GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16127 0.72 0.736304
Target:  5'- cGagACGAAGACGgugauggacgaacugCG-CGUCGUCGCg -3'
miRNA:   3'- cCagUGCUUCUGCa--------------GCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 31188 0.71 0.766429
Target:  5'- uGG-CugGGgaacAGcGCGUCGaCGUCGUCGCg -3'
miRNA:   3'- -CCaGugCU----UC-UGCAGCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35335 0.71 0.786541
Target:  5'- aGGUCGCc--GACGUCcaCcUCGUCGCg -3'
miRNA:   3'- -CCAGUGcuuCUGCAGcaGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 28653 0.71 0.796359
Target:  5'- cGUCGCGAugcaGGACG--GUCAUCGucUCGCc -3'
miRNA:   3'- cCAGUGCU----UCUGCagCAGUAGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 30037 0.7 0.806005
Target:  5'- aGGUCucGCGggGGCcgcUCG-CGUCGUUGUg -3'
miRNA:   3'- -CCAG--UGCuuCUGc--AGCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 31491 0.7 0.815467
Target:  5'- uGGUCugGuuucaaccaguGGACuUCGUCcgCGUUGCu -3'
miRNA:   3'- -CCAGugCu----------UCUGcAGCAGuaGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.