miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 16127 0.72 0.736304
Target:  5'- cGagACGAAGACGgugauggacgaacugCG-CGUCGUCGCg -3'
miRNA:   3'- cCagUGCUUCUGCa--------------GCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 31188 0.71 0.766429
Target:  5'- uGG-CugGGgaacAGcGCGUCGaCGUCGUCGCg -3'
miRNA:   3'- -CCaGugCU----UC-UGCAGCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35335 0.71 0.786541
Target:  5'- aGGUCGCc--GACGUCcaCcUCGUCGCg -3'
miRNA:   3'- -CCAGUGcuuCUGCAGcaGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 28653 0.71 0.796359
Target:  5'- cGUCGCGAugcaGGACG--GUCAUCGucUCGCc -3'
miRNA:   3'- cCAGUGCU----UCUGCagCAGUAGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 30037 0.7 0.806005
Target:  5'- aGGUCucGCGggGGCcgcUCG-CGUCGUUGUg -3'
miRNA:   3'- -CCAG--UGCuuCUGc--AGCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 31491 0.7 0.815467
Target:  5'- uGGUCugGuuucaaccaguGGACuUCGUCcgCGUUGCu -3'
miRNA:   3'- -CCAGugCu----------UCUGcAGCAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 19731 0.68 0.90478
Target:  5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3'
miRNA:   3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 52655 0.68 0.897919
Target:  5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3'
miRNA:   3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5'
16276 5' -50.5 NC_004084.1 + 34696 0.68 0.897919
Target:  5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3'
miRNA:   3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 47989 0.68 0.890788
Target:  5'- cGGgaugCACGAGGACGUCGacugCGagaUgGUCGa -3'
miRNA:   3'- -CCa---GUGCUUCUGCAGCa---GU---AgCAGCg -5'
16276 5' -50.5 NC_004084.1 + 56937 0.69 0.883392
Target:  5'- cGUCuACcAGGAgGUCGUCgAUCGcCGCa -3'
miRNA:   3'- cCAG-UGcUUCUgCAGCAG-UAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 32412 0.7 0.842649
Target:  5'- cGGUCcCGucGACGagcUCG-CAcUCGUCGCg -3'
miRNA:   3'- -CCAGuGCuuCUGC---AGCaGU-AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16103 0.66 0.949727
Target:  5'- cGUCcCGAcGGuCGUCGcgAUCGUCGCc -3'
miRNA:   3'- cCAGuGCU-UCuGCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 19973 0.66 0.954108
Target:  5'- uGGU--UGAcGACGUCGaCGUCG-CGCg -3'
miRNA:   3'- -CCAguGCUuCUGCAGCaGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 7174 0.66 0.958224
Target:  5'- cGGUCgcaGCGAuccGGACGUCGagCugcUCGaCGCa -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCa-Gu--AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 7476 0.66 0.958224
Target:  5'- cGUCGaggaGGAGAUcaggGUCGUCGaCGUCGa -3'
miRNA:   3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 34722 0.66 0.962079
Target:  5'- cGUCugGGAGACGcucaccgCGUcCAUUGcCGUc -3'
miRNA:   3'- cCAGugCUUCUGCa------GCA-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 58121 0.66 0.962079
Target:  5'- gGGUUcuCGucGGCgGUCGUCGUCGagcCGCc -3'
miRNA:   3'- -CCAGu-GCuuCUG-CAGCAGUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 48978 0.66 0.962079
Target:  5'- cGUCuuCGucGACGUCGcggccCAUCG-CGCg -3'
miRNA:   3'- cCAGu-GCuuCUGCAGCa----GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 45486 1.15 0.00202
Target:  5'- cGGUCACGAAGACGUCGUCAUCGUCGCc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGCAGUAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.