miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 17146 0.72 0.474129
Target:  5'- gGUUCacugauggGGACGAUCGCcGgCGACGUCg -3'
miRNA:   3'- -CAAGga------CCUGCUAGCGcUgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 18828 0.69 0.668466
Target:  5'- -gUCCaggaGGACGGUggCGCGGCUuuCGUCg -3'
miRNA:   3'- caAGGa---CCUGCUA--GCGCUGGuuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 18900 0.68 0.733455
Target:  5'- -aUCCUcgaGGACG-UCGCGAacgaUGACGUCc -3'
miRNA:   3'- caAGGA---CCUGCuAGCGCUg---GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 20917 0.67 0.788858
Target:  5'- gGUUCCUGGAUGcucgucuguucggguAUCuuccCGACCGugucACGUCg -3'
miRNA:   3'- -CAAGGACCUGC---------------UAGc---GCUGGU----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 21749 0.7 0.591206
Target:  5'- -cUCCUGGAC-AUCGaugcuGCCGAUGUCg -3'
miRNA:   3'- caAGGACCUGcUAGCgc---UGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 21753 0.72 0.474129
Target:  5'- --cCCUGGACGGUUccacggggaucgGCGGCauCGACGUCg -3'
miRNA:   3'- caaGGACCUGCUAG------------CGCUG--GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 21779 0.66 0.804431
Target:  5'- -aUCgaGGAgccguaCGAUCGCGAgccgaugcaccUCAACGUCa -3'
miRNA:   3'- caAGgaCCU------GCUAGCGCU-----------GGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 22985 0.66 0.832342
Target:  5'- -gUCCUGGuCGAccUCGCGAgcgagaUCGACGa- -3'
miRNA:   3'- caAGGACCuGCU--AGCGCU------GGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 26977 0.66 0.835925
Target:  5'- ---gCUGGuCGAcagagaccagauccaUCGCGGCC-GCGUCg -3'
miRNA:   3'- caagGACCuGCU---------------AGCGCUGGuUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 27051 0.7 0.580233
Target:  5'- -cUCuCUGGuguCGAUCGCGcgauGCuCGACGUCg -3'
miRNA:   3'- caAG-GACCu--GCUAGCGC----UG-GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 27181 0.68 0.701266
Target:  5'- -aUCuCaGGACGAUCGCGACgCugaauGCGUa -3'
miRNA:   3'- caAG-GaCCUGCUAGCGCUG-Gu----UGCAg -5'
16283 5' -53.5 NC_004084.1 + 27566 0.72 0.494659
Target:  5'- -cUCCcGGACGGUCGCcaggaGgCAGCGUCg -3'
miRNA:   3'- caAGGaCCUGCUAGCGc----UgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 28283 0.66 0.841234
Target:  5'- -cUCgUGGACGGgagucUCGCGAUCGggGCGg- -3'
miRNA:   3'- caAGgACCUGCU-----AGCGCUGGU--UGCag -5'
16283 5' -53.5 NC_004084.1 + 28819 0.71 0.536856
Target:  5'- -gUUgUGGGCGAgcaUCGCGACCGGuucgcCGUCu -3'
miRNA:   3'- caAGgACCUGCU---AGCGCUGGUU-----GCAG- -5'
16283 5' -53.5 NC_004084.1 + 29249 0.66 0.804431
Target:  5'- aGUUCCgcUGGACGAacggcccgCGCGACCAc---- -3'
miRNA:   3'- -CAAGG--ACCUGCUa-------GCGCUGGUugcag -5'
16283 5' -53.5 NC_004084.1 + 29318 0.71 0.569304
Target:  5'- --aCCUGGAUGG-CGCGGagGACGUCc -3'
miRNA:   3'- caaGGACCUGCUaGCGCUggUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29357 0.67 0.774883
Target:  5'- --cCCgagcGGGCGGUCGCGGCCuGCc-- -3'
miRNA:   3'- caaGGa---CCUGCUAGCGCUGGuUGcag -5'
16283 5' -53.5 NC_004084.1 + 29410 0.67 0.79475
Target:  5'- -cUCCUgGGGCG-UCGCGGuuGcCGUCg -3'
miRNA:   3'- caAGGA-CCUGCuAGCGCUggUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29419 0.69 0.679448
Target:  5'- -cUCCUGcaucGCGGUCaucaGGCCGACGUCg -3'
miRNA:   3'- caAGGACc---UGCUAGcg--CUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 30676 0.81 0.140885
Target:  5'- -cUCCUGGugGGcgGUGACCAGCGUCu -3'
miRNA:   3'- caAGGACCugCUagCGCUGGUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.