miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 384 0.7 0.602213
Target:  5'- --cCCggGGACG-UCGCcGCCGAUGUCg -3'
miRNA:   3'- caaGGa-CCUGCuAGCGcUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 1237 0.66 0.804431
Target:  5'- -aUCgaGGGCGAUCGCGcCCAucuCcUCa -3'
miRNA:   3'- caAGgaCCUGCUAGCGCuGGUu--GcAG- -5'
16283 5' -53.5 NC_004084.1 + 1467 0.67 0.774883
Target:  5'- cUUCgCUGaugcGGCGAUCGaCGACCuccugguaGACGUCg -3'
miRNA:   3'- cAAG-GAC----CUGCUAGC-GCUGG--------UUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 2844 0.66 0.823238
Target:  5'- -gUCCgcGGugGAUCGCagGACaccaucgaaGACGUCa -3'
miRNA:   3'- caAGGa-CCugCUAGCG--CUGg--------UUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 3587 0.7 0.602213
Target:  5'- -----cGGGCGAcCGCGACgAACGUCc -3'
miRNA:   3'- caaggaCCUGCUaGCGCUGgUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 5137 0.72 0.464026
Target:  5'- --aCCUcGGCG-UgGCGACCGACGUCg -3'
miRNA:   3'- caaGGAcCUGCuAgCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 5710 0.7 0.624296
Target:  5'- aGUUCgaGGACG-UCGCucgGGCCGAgGUCc -3'
miRNA:   3'- -CAAGgaCCUGCuAGCG---CUGGUUgCAG- -5'
16283 5' -53.5 NC_004084.1 + 6123 0.66 0.812989
Target:  5'- cGUUCa-GGuCGAUgcgauucCGCGACCAGCGcCg -3'
miRNA:   3'- -CAAGgaCCuGCUA-------GCGCUGGUUGCaG- -5'
16283 5' -53.5 NC_004084.1 + 6158 0.67 0.791811
Target:  5'- gGUUCCUGG-CGAUCGgGcuCCAGguggaccucgagcuCGUCu -3'
miRNA:   3'- -CAAGGACCuGCUAGCgCu-GGUU--------------GCAG- -5'
16283 5' -53.5 NC_004084.1 + 8294 0.68 0.690386
Target:  5'- -aUCC-GGACGAUCGCGGgccUCGAC-UCg -3'
miRNA:   3'- caAGGaCCUGCUAGCGCU---GGUUGcAG- -5'
16283 5' -53.5 NC_004084.1 + 9222 0.74 0.396695
Target:  5'- -gUCCUGGAugaccugcuCGAUCaggGCGuCCAGCGUCu -3'
miRNA:   3'- caAGGACCU---------GCUAG---CGCuGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 10246 0.68 0.743995
Target:  5'- --gCCUGG-UGAgUCGCGGUCGGCGUCc -3'
miRNA:   3'- caaGGACCuGCU-AGCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 11927 0.7 0.613246
Target:  5'- --aCCgGcGACG-UCGCGACCAGCGa- -3'
miRNA:   3'- caaGGaC-CUGCuAGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 12064 0.66 0.841234
Target:  5'- -gUCCUGGACGAaacccacagUUggGCGAgCGACGa- -3'
miRNA:   3'- caAGGACCUGCU---------AG--CGCUgGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 12925 0.71 0.533645
Target:  5'- ---aCUGGGCGAcgaugacgacgucuUCGUGACCGACGa- -3'
miRNA:   3'- caagGACCUGCU--------------AGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 13567 0.66 0.832342
Target:  5'- -cUCCUGGAa-GUCGCgGGCCGAUccgaccucgGUCa -3'
miRNA:   3'- caAGGACCUgcUAGCG-CUGGUUG---------CAG- -5'
16283 5' -53.5 NC_004084.1 + 13796 0.68 0.690386
Target:  5'- -gUCC-GGuuGGUCGCGACCGagGCGaUCg -3'
miRNA:   3'- caAGGaCCugCUAGCGCUGGU--UGC-AG- -5'
16283 5' -53.5 NC_004084.1 + 16621 0.68 0.690386
Target:  5'- -cUCCUcgaGGuCGAUCGUGACgcccucgucguCGACGUCg -3'
miRNA:   3'- caAGGA---CCuGCUAGCGCUG-----------GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 16660 0.66 0.813931
Target:  5'- -gUCCgGGAgGuccUCGUcGCCGGCGUCg -3'
miRNA:   3'- caAGGaCCUgCu--AGCGcUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 16908 0.7 0.602213
Target:  5'- cGUUCCcaGGCGAUCGUGGCCGgguGCGg- -3'
miRNA:   3'- -CAAGGacCUGCUAGCGCUGGU---UGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.