Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 41717 | 1.11 | 0.001354 |
Target: 5'- aGUUCCUGGACGAUCGCGACCAACGUCg -3' miRNA: 3'- -CAAGGACCUGCUAGCGCUGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 30676 | 0.81 | 0.140885 |
Target: 5'- -cUCCUGGugGGcgGUGACCAGCGUCu -3' miRNA: 3'- caAGGACCugCUagCGCUGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 35220 | 0.79 | 0.201046 |
Target: 5'- -aUCgaGccGACGAUCGCGAUCGACGUCg -3' miRNA: 3'- caAGgaC--CUGCUAGCGCUGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 9222 | 0.74 | 0.396695 |
Target: 5'- -gUCCUGGAugaccugcuCGAUCaggGCGuCCAGCGUCu -3' miRNA: 3'- caAGGACCU---------GCUAG---CGCuGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 47011 | 0.74 | 0.405927 |
Target: 5'- aGUUCCUcgaGGACG-UCGCGAUCGAUGa- -3' miRNA: 3'- -CAAGGA---CCUGCuAGCGCUGGUUGCag -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 48027 | 0.73 | 0.434414 |
Target: 5'- --aCCUGGACGA-CGaCGAgcUCGACGUCg -3' miRNA: 3'- caaGGACCUGCUaGC-GCU--GGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 5137 | 0.72 | 0.464026 |
Target: 5'- --aCCUcGGCG-UgGCGACCGACGUCg -3' miRNA: 3'- caaGGAcCUGCuAgCGCUGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 17146 | 0.72 | 0.474129 |
Target: 5'- gGUUCacugauggGGACGAUCGCcGgCGACGUCg -3' miRNA: 3'- -CAAGga------CCUGCUAGCGcUgGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 21753 | 0.72 | 0.474129 |
Target: 5'- --cCCUGGACGGUUccacggggaucgGCGGCauCGACGUCg -3' miRNA: 3'- caaGGACCUGCUAG------------CGCUG--GUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 58242 | 0.72 | 0.493622 |
Target: 5'- -cUUCUGGgaccuucACGAUCGCGACCAcuACGcCu -3' miRNA: 3'- caAGGACC-------UGCUAGCGCUGGU--UGCaG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 27566 | 0.72 | 0.494659 |
Target: 5'- -cUCCcGGACGGUCGCcaggaGgCAGCGUCg -3' miRNA: 3'- caAGGaCCUGCUAGCGc----UgGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 30919 | 0.71 | 0.515583 |
Target: 5'- -cUCCUGGAagacguCGAUCGCucgUCGACGUCg -3' miRNA: 3'- caAGGACCU------GCUAGCGcu-GGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 12925 | 0.71 | 0.533645 |
Target: 5'- ---aCUGGGCGAcgaugacgacgucuUCGUGACCGACGa- -3' miRNA: 3'- caagGACCUGCU--------------AGCGCUGGUUGCag -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 28819 | 0.71 | 0.536856 |
Target: 5'- -gUUgUGGGCGAgcaUCGCGACCGGuucgcCGUCu -3' miRNA: 3'- caAGgACCUGCU---AGCGCUGGUU-----GCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 42300 | 0.71 | 0.558426 |
Target: 5'- cGUUCaCgaucgGcGACGAUCGCGACgAcCGUCg -3' miRNA: 3'- -CAAG-Ga----C-CUGCUAGCGCUGgUuGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 29318 | 0.71 | 0.569304 |
Target: 5'- --aCCUGGAUGG-CGCGGagGACGUCc -3' miRNA: 3'- caaGGACCUGCUaGCGCUggUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 27051 | 0.7 | 0.580233 |
Target: 5'- -cUCuCUGGuguCGAUCGCGcgauGCuCGACGUCg -3' miRNA: 3'- caAG-GACCu--GCUAGCGC----UG-GUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 21749 | 0.7 | 0.591206 |
Target: 5'- -cUCCUGGAC-AUCGaugcuGCCGAUGUCg -3' miRNA: 3'- caAGGACCUGcUAGCgc---UGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 384 | 0.7 | 0.602213 |
Target: 5'- --cCCggGGACG-UCGCcGCCGAUGUCg -3' miRNA: 3'- caaGGa-CCUGCuAGCGcUGGUUGCAG- -5' |
|||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 3587 | 0.7 | 0.602213 |
Target: 5'- -----cGGGCGAcCGCGACgAACGUCc -3' miRNA: 3'- caaggaCCUGCUaGCGCUGgUUGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home