miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 32282 0.67 0.768803
Target:  5'- --aCCUGGGCGugcucAccgacaacgcgaucgUCGCGACCGggaACGUCc -3'
miRNA:   3'- caaGGACCUGC-----U---------------AGCGCUGGU---UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 3587 0.7 0.602213
Target:  5'- -----cGGGCGAcCGCGACgAACGUCc -3'
miRNA:   3'- caaggaCCUGCUaGCGCUGgUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 11927 0.7 0.613246
Target:  5'- --aCCgGcGACG-UCGCGACCAGCGa- -3'
miRNA:   3'- caaGGaC-CUGCuAGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 49529 0.69 0.668466
Target:  5'- -aUCCacGGACGAUCGagguGAUCGGCGUg -3'
miRNA:   3'- caAGGa-CCUGCUAGCg---CUGGUUGCAg -5'
16283 5' -53.5 NC_004084.1 + 29419 0.69 0.679448
Target:  5'- -cUCCUGcaucGCGGUCaucaGGCCGACGUCg -3'
miRNA:   3'- caAGGACc---UGCUAGcg--CUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41774 0.69 0.679448
Target:  5'- -cUCCcGGACGAcgUCGaCGACgAggGCGUCa -3'
miRNA:   3'- caAGGaCCUGCU--AGC-GCUGgU--UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 40916 0.68 0.689294
Target:  5'- --gCCUGGACGAggaGCagcuaccgggcugGACgGACGUCg -3'
miRNA:   3'- caaGGACCUGCUag-CG-------------CUGgUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 8294 0.68 0.690386
Target:  5'- -aUCC-GGACGAUCGCGGgccUCGAC-UCg -3'
miRNA:   3'- caAGGaCCUGCUAGCGCU---GGUUGcAG- -5'
16283 5' -53.5 NC_004084.1 + 39606 0.68 0.733455
Target:  5'- -cUCCUGGACG-UgGCcGgCGACGUCc -3'
miRNA:   3'- caAGGACCUGCuAgCGcUgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 21749 0.7 0.591206
Target:  5'- -cUCCUGGAC-AUCGaugcuGCCGAUGUCg -3'
miRNA:   3'- caAGGACCUGcUAGCgc---UGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29318 0.71 0.569304
Target:  5'- --aCCUGGAUGG-CGCGGagGACGUCc -3'
miRNA:   3'- caaGGACCUGCUaGCGCUggUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 42300 0.71 0.558426
Target:  5'- cGUUCaCgaucgGcGACGAUCGCGACgAcCGUCg -3'
miRNA:   3'- -CAAG-Ga----C-CUGCUAGCGCUGgUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 47011 0.74 0.405927
Target:  5'- aGUUCCUcgaGGACG-UCGCGAUCGAUGa- -3'
miRNA:   3'- -CAAGGA---CCUGCuAGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 48027 0.73 0.434414
Target:  5'- --aCCUGGACGA-CGaCGAgcUCGACGUCg -3'
miRNA:   3'- caaGGACCUGCUaGC-GCU--GGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 5137 0.72 0.464026
Target:  5'- --aCCUcGGCG-UgGCGACCGACGUCg -3'
miRNA:   3'- caaGGAcCUGCuAgCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 17146 0.72 0.474129
Target:  5'- gGUUCacugauggGGACGAUCGCcGgCGACGUCg -3'
miRNA:   3'- -CAAGga------CCUGCUAGCGcUgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 58242 0.72 0.493622
Target:  5'- -cUUCUGGgaccuucACGAUCGCGACCAcuACGcCu -3'
miRNA:   3'- caAGGACC-------UGCUAGCGCUGGU--UGCaG- -5'
16283 5' -53.5 NC_004084.1 + 27566 0.72 0.494659
Target:  5'- -cUCCcGGACGGUCGCcaggaGgCAGCGUCg -3'
miRNA:   3'- caAGGaCCUGCUAGCGc----UgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 12925 0.71 0.533645
Target:  5'- ---aCUGGGCGAcgaugacgacgucuUCGUGACCGACGa- -3'
miRNA:   3'- caagGACCUGCU--------------AGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 28819 0.71 0.536856
Target:  5'- -gUUgUGGGCGAgcaUCGCGACCGGuucgcCGUCu -3'
miRNA:   3'- caAGgACCUGCU---AGCGCUGGUU-----GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.