Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 48027 | 0.73 | 0.434414 |
Target: 5'- --aCCUGGACGA-CGaCGAgcUCGACGUCg -3' miRNA: 3'- caaGGACCUGCUaGC-GCU--GGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 5137 | 0.72 | 0.464026 |
Target: 5'- --aCCUcGGCG-UgGCGACCGACGUCg -3' miRNA: 3'- caaGGAcCUGCuAgCGCUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 17146 | 0.72 | 0.474129 |
Target: 5'- gGUUCacugauggGGACGAUCGCcGgCGACGUCg -3' miRNA: 3'- -CAAGga------CCUGCUAGCGcUgGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 58242 | 0.72 | 0.493622 |
Target: 5'- -cUUCUGGgaccuucACGAUCGCGACCAcuACGcCu -3' miRNA: 3'- caAGGACC-------UGCUAGCGCUGGU--UGCaG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 27566 | 0.72 | 0.494659 |
Target: 5'- -cUCCcGGACGGUCGCcaggaGgCAGCGUCg -3' miRNA: 3'- caAGGaCCUGCUAGCGc----UgGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 12925 | 0.71 | 0.533645 |
Target: 5'- ---aCUGGGCGAcgaugacgacgucuUCGUGACCGACGa- -3' miRNA: 3'- caagGACCUGCU--------------AGCGCUGGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 28819 | 0.71 | 0.536856 |
Target: 5'- -gUUgUGGGCGAgcaUCGCGACCGGuucgcCGUCu -3' miRNA: 3'- caAGgACCUGCU---AGCGCUGGUU-----GCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 49529 | 0.69 | 0.668466 |
Target: 5'- -aUCCacGGACGAUCGagguGAUCGGCGUg -3' miRNA: 3'- caAGGa-CCUGCUAGCg---CUGGUUGCAg -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 11927 | 0.7 | 0.613246 |
Target: 5'- --aCCgGcGACG-UCGCGACCAGCGa- -3' miRNA: 3'- caaGGaC-CUGCuAGCGCUGGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 3587 | 0.7 | 0.602213 |
Target: 5'- -----cGGGCGAcCGCGACgAACGUCc -3' miRNA: 3'- caaggaCCUGCUaGCGCUGgUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 21749 | 0.7 | 0.591206 |
Target: 5'- -cUCCUGGAC-AUCGaugcuGCCGAUGUCg -3' miRNA: 3'- caAGGACCUGcUAGCgc---UGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 29318 | 0.71 | 0.569304 |
Target: 5'- --aCCUGGAUGG-CGCGGagGACGUCc -3' miRNA: 3'- caaGGACCUGCUaGCGCUggUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 42300 | 0.71 | 0.558426 |
Target: 5'- cGUUCaCgaucgGcGACGAUCGCGACgAcCGUCg -3' miRNA: 3'- -CAAG-Ga----C-CUGCUAGCGCUGgUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 29249 | 0.66 | 0.804431 |
Target: 5'- aGUUCCgcUGGACGAacggcccgCGCGACCAc---- -3' miRNA: 3'- -CAAGG--ACCUGCUa-------GCGCUGGUugcag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 46753 | 0.66 | 0.804431 |
Target: 5'- -gUCCUcGcCGuagucGUCGcCGACCGACGUCg -3' miRNA: 3'- caAGGAcCuGC-----UAGC-GCUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 6123 | 0.66 | 0.812989 |
Target: 5'- cGUUCa-GGuCGAUgcgauucCGCGACCAGCGcCg -3' miRNA: 3'- -CAAGgaCCuGCUA-------GCGCUGGUUGCaG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 16660 | 0.66 | 0.813931 |
Target: 5'- -gUCCgGGAgGuccUCGUcGCCGGCGUCg -3' miRNA: 3'- caAGGaCCUgCu--AGCGcUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 13567 | 0.66 | 0.832342 |
Target: 5'- -cUCCUGGAa-GUCGCgGGCCGAUccgaccucgGUCa -3' miRNA: 3'- caAGGACCUgcUAGCG-CUGGUUG---------CAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 43117 | 0.66 | 0.841234 |
Target: 5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3' miRNA: 3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 41717 | 1.11 | 0.001354 |
Target: 5'- aGUUCCUGGACGAUCGCGACCAACGUCg -3' miRNA: 3'- -CAAGGACCUGCUAGCGCUGGUUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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