Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 28823 | 0.66 | 0.786483 |
Target: 5'- uGGGCGAGCaucgCGACcGGUucGCCGUc -3' miRNA: 3'- uCCUGCUCGacuaGCUGaCUA--CGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 41111 | 0.66 | 0.786483 |
Target: 5'- cGGGA-GAGgaGGUUGAUgcgUGAUGgCGCu -3' miRNA: 3'- -UCCUgCUCgaCUAGCUG---ACUACgGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 18039 | 0.66 | 0.776545 |
Target: 5'- uGGucCGAGaccaUG-UCGGCggcuuUGAUGCCGCg -3' miRNA: 3'- uCCu-GCUCg---ACuAGCUG-----ACUACGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 15292 | 0.66 | 0.776545 |
Target: 5'- -cGGCG-GCUGG-CGACggUGAUGaCCGCc -3' miRNA: 3'- ucCUGCuCGACUaGCUG--ACUAC-GGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 7851 | 0.66 | 0.776545 |
Target: 5'- uGGGACGAGUucuggacggacaUGAUCGAg-GAgacuCCGCu -3' miRNA: 3'- -UCCUGCUCG------------ACUAGCUgaCUac--GGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 37983 | 0.66 | 0.756232 |
Target: 5'- -aGACG-GUUGA-CGACUGAaGCCaGCg -3' miRNA: 3'- ucCUGCuCGACUaGCUGACUaCGG-CG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 57172 | 0.66 | 0.744838 |
Target: 5'- cAGGAUGAGgaGAUgGGCgcGAUcgcccucgaucccGCCGCc -3' miRNA: 3'- -UCCUGCUCgaCUAgCUGa-CUA-------------CGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 27634 | 0.67 | 0.703434 |
Target: 5'- -cGACGcAGaagUGAUCGAgggGAUGCCGCc -3' miRNA: 3'- ucCUGC-UCg--ACUAGCUga-CUACGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 9707 | 0.67 | 0.69262 |
Target: 5'- cGG-UGAGUUGGcCGACgccGAUGCCGg -3' miRNA: 3'- uCCuGCUCGACUaGCUGa--CUACGGCg -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 39329 | 0.67 | 0.69262 |
Target: 5'- --cGCGGuGCUGAUCGACgucgacguaGAcgGCCGCg -3' miRNA: 3'- uccUGCU-CGACUAGCUGa--------CUa-CGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 30717 | 0.67 | 0.681748 |
Target: 5'- -cGAgGAGCUGAUCGAUgg--GCUGUu -3' miRNA: 3'- ucCUgCUCGACUAGCUGacuaCGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 5877 | 0.68 | 0.666451 |
Target: 5'- gAGGAgGAGCagaccgccacgggGAUCGucCUGAcGCCGUa -3' miRNA: 3'- -UCCUgCUCGa------------CUAGCu-GACUaCGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 2274 | 0.68 | 0.648892 |
Target: 5'- gAGGAgaugGGGCUGGUCGACgccGAcgacacUGCgGCg -3' miRNA: 3'- -UCCUg---CUCGACUAGCUGa--CU------ACGgCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 57654 | 0.68 | 0.626893 |
Target: 5'- -cGACGAGCcGAUCGGcCUGGUGguCCaGCg -3' miRNA: 3'- ucCUGCUCGaCUAGCU-GACUAC--GG-CG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 42244 | 0.69 | 0.615896 |
Target: 5'- cGGACGgaacGGUggUGGUCGAgUGAUGCUcgaGCa -3' miRNA: 3'- uCCUGC----UCG--ACUAGCUgACUACGG---CG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 5021 | 0.7 | 0.550521 |
Target: 5'- gGGGAucaaCGGGCUGAUCGAg-GAUGgCGa -3' miRNA: 3'- -UCCU----GCUCGACUAGCUgaCUACgGCg -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 51429 | 0.71 | 0.49772 |
Target: 5'- gAGGGCGAcacGCUGAUCuACguuggcGAggGCCGCg -3' miRNA: 3'- -UCCUGCU---CGACUAGcUGa-----CUa-CGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 2023 | 0.71 | 0.487425 |
Target: 5'- cGGGAgcCGAGCgucuccgagaGGUCGAUgucGAUGCCGUa -3' miRNA: 3'- -UCCU--GCUCGa---------CUAGCUGa--CUACGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 41484 | 0.71 | 0.477232 |
Target: 5'- cGGGCGAGaacggaagacGAUCG-CgGAUGCCGCu -3' miRNA: 3'- uCCUGCUCga--------CUAGCuGaCUACGGCG- -5' |
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16286 | 3' | -54.6 | NC_004084.1 | + | 42730 | 0.71 | 0.447309 |
Target: 5'- -cGGCGAGUUGAUCGGCUGcgagcGCCa- -3' miRNA: 3'- ucCUGCUCGACUAGCUGACua---CGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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