miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16286 5' -55.8 NC_004084.1 + 28960 0.66 0.674182
Target:  5'- -cGCGUCUaCGAgaaaaucuaccAGCgcgCGACCGaCGUCg -3'
miRNA:   3'- auCGCAGA-GCU-----------UCGa--GCUGGUcGCAG- -5'
16286 5' -55.8 NC_004084.1 + 30694 0.73 0.301447
Target:  5'- cAGCGUCUCGccuGGCUCcucacccggGAaCAGCGUCg -3'
miRNA:   3'- aUCGCAGAGCu--UCGAG---------CUgGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 30771 0.68 0.575193
Target:  5'- gAGCGaccucCUCGAGGCguacgCGAuCCAGCG-Cg -3'
miRNA:   3'- aUCGCa----GAGCUUCGa----GCU-GGUCGCaG- -5'
16286 5' -55.8 NC_004084.1 + 30824 0.66 0.685119
Target:  5'- ----uUCUCGAAGCcguacUUGACCAGCGa- -3'
miRNA:   3'- aucgcAGAGCUUCG-----AGCUGGUCGCag -5'
16286 5' -55.8 NC_004084.1 + 33609 0.7 0.419756
Target:  5'- gUGGCGUCUCGAucGGCgcaCGAUCAGUccucuucgagaagGUCu -3'
miRNA:   3'- -AUCGCAGAGCU--UCGa--GCUGGUCG-------------CAG- -5'
16286 5' -55.8 NC_004084.1 + 34915 0.66 0.685119
Target:  5'- gAGCa-CUCGAAGCUCccGGCCAucuCGUCa -3'
miRNA:   3'- aUCGcaGAGCUUCGAG--CUGGUc--GCAG- -5'
16286 5' -55.8 NC_004084.1 + 36004 0.68 0.575193
Target:  5'- -cGCGUCgUCGGAGC-CGAgaAGCGUg -3'
miRNA:   3'- auCGCAG-AGCUUCGaGCUggUCGCAg -5'
16286 5' -55.8 NC_004084.1 + 36409 0.7 0.449729
Target:  5'- gAGUGUgUCGAuGUUCGuCCGcGCGUCg -3'
miRNA:   3'- aUCGCAgAGCUuCGAGCuGGU-CGCAG- -5'
16286 5' -55.8 NC_004084.1 + 38336 0.68 0.56431
Target:  5'- cGGuCGUCUUccGGUUCGcuCCGGCGUCg -3'
miRNA:   3'- aUC-GCAGAGcuUCGAGCu-GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 38896 0.83 0.064699
Target:  5'- cAGCGUCUUcGAGCUCGaACCGGCGUUg -3'
miRNA:   3'- aUCGCAGAGcUUCGAGC-UGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 39384 0.67 0.60809
Target:  5'- gAGCaugGUUUCGAAGUccaguUCGAgcUCGGCGUCg -3'
miRNA:   3'- aUCG---CAGAGCUUCG-----AGCU--GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 40732 1.08 0.000917
Target:  5'- gUAGCGUCUCGAAGCUCGACCAGCGUCg -3'
miRNA:   3'- -AUCGCAGAGCUUCGAGCUGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 43642 0.68 0.53202
Target:  5'- gGGCGUCUCGAuaGGCaCGaACgGGCGg- -3'
miRNA:   3'- aUCGCAGAGCU--UCGaGC-UGgUCGCag -5'
16286 5' -55.8 NC_004084.1 + 45478 0.68 0.56431
Target:  5'- gAGC--CUCGuucGGCgUCGAUCAGCGUCu -3'
miRNA:   3'- aUCGcaGAGCu--UCG-AGCUGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 45648 0.74 0.243979
Target:  5'- cGGCGUCUCGGAuGC-CGACaacgacgagacgguCGGCGUCg -3'
miRNA:   3'- aUCGCAGAGCUU-CGaGCUG--------------GUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 48037 0.67 0.60809
Target:  5'- -cGCG-CUCGAucgccuGCUCGACUcuCGUCg -3'
miRNA:   3'- auCGCaGAGCUu-----CGAGCUGGucGCAG- -5'
16286 5' -55.8 NC_004084.1 + 50266 0.67 0.630141
Target:  5'- uUGGCGgcgaggucCUCGAcgucuGC-CGACCAGgCGUCg -3'
miRNA:   3'- -AUCGCa-------GAGCUu----CGaGCUGGUC-GCAG- -5'
16286 5' -55.8 NC_004084.1 + 50592 0.68 0.542716
Target:  5'- gAGCGgaUCUgGGAGCgugccuCCAGCGUCg -3'
miRNA:   3'- aUCGC--AGAgCUUCGagcu--GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 52602 0.69 0.479822
Target:  5'- cGGUGggUCGAGGCagUCGAcacgcCCGGCGUCg -3'
miRNA:   3'- aUCGCagAGCUUCG--AGCU-----GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 52952 0.66 0.700343
Target:  5'- cGGCGgCUgGGAGCUCGucaacaucuccucugACCGcGUGUCa -3'
miRNA:   3'- aUCGCaGAgCUUCGAGC---------------UGGU-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.