miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16294 3' -52.4 NC_004084.1 + 17931 0.7 0.658353
Target:  5'- cUgCAGGUCGAucAGGUCGUCgcguUCGAGGCc -3'
miRNA:   3'- cAgGUUCAGCU--UCUAGCAG----GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 26437 0.72 0.558538
Target:  5'- aUCCAGGUCGAucacgaGGAcgUCGuUCCCGAG-Cu -3'
miRNA:   3'- cAGGUUCAGCU------UCU--AGC-AGGGCUCuG- -5'
16294 3' -52.4 NC_004084.1 + 50118 0.73 0.473588
Target:  5'- cUUCGAGUCGAGgcccgcGAUCGUCCgGAuGACg -3'
miRNA:   3'- cAGGUUCAGCUU------CUAGCAGGgCU-CUG- -5'
16294 3' -52.4 NC_004084.1 + 45969 0.74 0.462399
Target:  5'- uGUCCGAGUCGGcuccugcGGUCGUCacggcguUCGAGACg -3'
miRNA:   3'- -CAGGUUCAGCUu------CUAGCAG-------GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 10978 0.75 0.395624
Target:  5'- uUCCGGGUCGAaucGGAUCGUCuuGucgccGACg -3'
miRNA:   3'- cAGGUUCAGCU---UCUAGCAGggCu----CUG- -5'
16294 3' -52.4 NC_004084.1 + 57609 0.67 0.806283
Target:  5'- --aCGGGUUGAGGAguucgcgcuUCGUCUCGAGGu -3'
miRNA:   3'- cagGUUCAGCUUCU---------AGCAGGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 8815 0.67 0.825161
Target:  5'- cGUCCAGGUggUGGAGcgUGUCgCCGAcACa -3'
miRNA:   3'- -CAGGUUCA--GCUUCuaGCAG-GGCUcUG- -5'
16294 3' -52.4 NC_004084.1 + 12782 0.66 0.891629
Target:  5'- aUCCGAgacgccGUCGAcgaccgacAGGUUGUCagCCGGGACg -3'
miRNA:   3'- cAGGUU------CAGCU--------UCUAGCAG--GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 18217 0.66 0.88344
Target:  5'- cGUCCAGcUCGAggugaacgAGGUCGccggaguuggccaUCCCGAuGACg -3'
miRNA:   3'- -CAGGUUcAGCU--------UCUAGC-------------AGGGCU-CUG- -5'
16294 3' -52.4 NC_004084.1 + 3902 0.66 0.879613
Target:  5'- cGUCCAGgugccgguuguagucGUCGAAGG-CGUCCuCGAaccGGCu -3'
miRNA:   3'- -CAGGUU---------------CAGCUUCUaGCAGG-GCU---CUG- -5'
16294 3' -52.4 NC_004084.1 + 56737 0.66 0.868549
Target:  5'- cGUCCuucgcGUCGAucAGGUCG-CCCGAcGAg -3'
miRNA:   3'- -CAGGuu---CAGCU--UCUAGCaGGGCU-CUg -5'
16294 3' -52.4 NC_004084.1 + 18112 0.66 0.868549
Target:  5'- gGUCgAGGUCGggGAuguccggcUCGgCCCG-GAUg -3'
miRNA:   3'- -CAGgUUCAGCuuCU--------AGCaGGGCuCUG- -5'
16294 3' -52.4 NC_004084.1 + 23530 0.66 0.860343
Target:  5'- -aCCAGGgaUCGAAGAUC-UCCCGccACa -3'
miRNA:   3'- caGGUUC--AGCUUCUAGcAGGGCucUG- -5'
16294 3' -52.4 NC_004084.1 + 35250 0.66 0.851893
Target:  5'- uUCCA---CGAAGAacucCGUCCCGAGGg -3'
miRNA:   3'- cAGGUucaGCUUCUa---GCAGGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 14917 0.67 0.844086
Target:  5'- cUCCGgguucgccucgaucuGGUCGAAGAuccggugaagaugcUCGUC-CGGGACa -3'
miRNA:   3'- cAGGU---------------UCAGCUUCU--------------AGCAGgGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 53053 0.67 0.843207
Target:  5'- gGUUCGAcGUCG-AGAUCGUCCCa---- -3'
miRNA:   3'- -CAGGUU-CAGCuUCUAGCAGGGcucug -5'
16294 3' -52.4 NC_004084.1 + 26947 0.67 0.828839
Target:  5'- -aCCAGGUCGAAGcgaugcgugcugcCGUCCuCGAGGg -3'
miRNA:   3'- caGGUUCAGCUUCua-----------GCAGG-GCUCUg -5'
16294 3' -52.4 NC_004084.1 + 36801 1.1 0.001796
Target:  5'- gGUCCAAGUCGAAGAUCGUCCCGAGACg -3'
miRNA:   3'- -CAGGUUCAGCUUCUAGCAGGGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.