miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16294 3' -52.4 NC_004084.1 + 15377 0.74 0.430668
Target:  5'- aGUCCAuggaagaAGUCGAAGAgaguucugagggCGUCUCGAGAg -3'
miRNA:   3'- -CAGGU-------UCAGCUUCUa-----------GCAGGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 19619 0.66 0.884198
Target:  5'- --aCGAGUCGggGAgcgaGUUCCGGcucGACg -3'
miRNA:   3'- cagGUUCAGCuuCUag--CAGGGCU---CUG- -5'
16294 3' -52.4 NC_004084.1 + 28776 0.66 0.868549
Target:  5'- uGUCCGcgcGGUCGucGA-CGUCCgGAGcCg -3'
miRNA:   3'- -CAGGU---UCAGCuuCUaGCAGGgCUCuG- -5'
16294 3' -52.4 NC_004084.1 + 49284 0.66 0.860343
Target:  5'- -gCgAAGUCGAAGG-CGUUCCG-GAUg -3'
miRNA:   3'- caGgUUCAGCUUCUaGCAGGGCuCUG- -5'
16294 3' -52.4 NC_004084.1 + 19299 0.66 0.860343
Target:  5'- cGUCCGAGUUGAAGAg-GUCgaCGAcgaucGACg -3'
miRNA:   3'- -CAGGUUCAGCUUCUagCAGg-GCU-----CUG- -5'
16294 3' -52.4 NC_004084.1 + 21927 0.67 0.843207
Target:  5'- aGUUCGAcGUCGAGGAaauugucggCGUCCgGAcGACg -3'
miRNA:   3'- -CAGGUU-CAGCUUCUa--------GCAGGgCU-CUG- -5'
16294 3' -52.4 NC_004084.1 + 50033 0.67 0.824236
Target:  5'- aUCCGacgaaAGUCGAAGAugcUCGUCCCucaccggGuGGCg -3'
miRNA:   3'- cAGGU-----UCAGCUUCU---AGCAGGG-------CuCUG- -5'
16294 3' -52.4 NC_004084.1 + 1704 0.67 0.82238
Target:  5'- cGUCCGAGUCccagcgGAGGAuggcggcugcucgaUCGgugaCCGAGACc -3'
miRNA:   3'- -CAGGUUCAG------CUUCU--------------AGCag--GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 11880 0.68 0.776592
Target:  5'- aUCCGGacGUCGAAGAcuUCGaUgCCGAGAUc -3'
miRNA:   3'- cAGGUU--CAGCUUCU--AGC-AgGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 52663 0.73 0.494271
Target:  5'- --gCGAGaCGGAGAUCGUCgUCGAGGCg -3'
miRNA:   3'- cagGUUCaGCUUCUAGCAG-GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 41710 0.72 0.526035
Target:  5'- cGUCCcGGucuUCGAccuucAGAUCGUCCCGGauGACg -3'
miRNA:   3'- -CAGGuUC---AGCU-----UCUAGCAGGGCU--CUG- -5'
16294 3' -52.4 NC_004084.1 + 31235 0.71 0.602678
Target:  5'- aUUCAGcGUCGc-GAUCGUCCUGAGAUu -3'
miRNA:   3'- cAGGUU-CAGCuuCUAGCAGGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 1894 0.71 0.624939
Target:  5'- -gCCAAGUCGggGAUgGggCCGAccGACa -3'
miRNA:   3'- caGGUUCAGCuuCUAgCagGGCU--CUG- -5'
16294 3' -52.4 NC_004084.1 + 48855 0.7 0.658353
Target:  5'- uUCUucGUgaUGGAGAaCGUCCCGGGGCu -3'
miRNA:   3'- cAGGuuCA--GCUUCUaGCAGGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 18273 0.69 0.702501
Target:  5'- aUCCGAGUgggaacgagaCGGAGAUCacaCCCGAGAa -3'
miRNA:   3'- cAGGUUCA----------GCUUCUAGca-GGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 36801 1.1 0.001796
Target:  5'- gGUCCAAGUCGAAGAUCGUCCCGAGACg -3'
miRNA:   3'- -CAGGUUCAGCUUCUAGCAGGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 18217 0.66 0.88344
Target:  5'- cGUCCAGcUCGAggugaacgAGGUCGccggaguuggccaUCCCGAuGACg -3'
miRNA:   3'- -CAGGUUcAGCU--------UCUAGC-------------AGGGCU-CUG- -5'
16294 3' -52.4 NC_004084.1 + 3902 0.66 0.879613
Target:  5'- cGUCCAGgugccgguuguagucGUCGAAGG-CGUCCuCGAaccGGCu -3'
miRNA:   3'- -CAGGUU---------------CAGCUUCUaGCAGG-GCU---CUG- -5'
16294 3' -52.4 NC_004084.1 + 56737 0.66 0.868549
Target:  5'- cGUCCuucgcGUCGAucAGGUCG-CCCGAcGAg -3'
miRNA:   3'- -CAGGuu---CAGCU--UCUAGCaGGGCU-CUg -5'
16294 3' -52.4 NC_004084.1 + 18112 0.66 0.868549
Target:  5'- gGUCgAGGUCGggGAuguccggcUCGgCCCG-GAUg -3'
miRNA:   3'- -CAGgUUCAGCuuCU--------AGCaGGGCuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.