miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16294 3' -52.4 NC_004084.1 + 36801 1.1 0.001796
Target:  5'- gGUCCAAGUCGAAGAUCGUCCCGAGACg -3'
miRNA:   3'- -CAGGUUCAGCUUCUAGCAGGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 10978 0.75 0.395624
Target:  5'- uUCCGGGUCGAaucGGAUCGUCuuGucgccGACg -3'
miRNA:   3'- cAGGUUCAGCU---UCUAGCAGggCu----CUG- -5'
16294 3' -52.4 NC_004084.1 + 15377 0.74 0.430668
Target:  5'- aGUCCAuggaagaAGUCGAAGAgaguucugagggCGUCUCGAGAg -3'
miRNA:   3'- -CAGGU-------UCAGCUUCUa-----------GCAGGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 45969 0.74 0.462399
Target:  5'- uGUCCGAGUCGGcuccugcGGUCGUCacggcguUCGAGACg -3'
miRNA:   3'- -CAGGUUCAGCUu------CUAGCAG-------GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 50118 0.73 0.473588
Target:  5'- cUUCGAGUCGAGgcccgcGAUCGUCCgGAuGACg -3'
miRNA:   3'- cAGGUUCAGCUU------CUAGCAGGgCU-CUG- -5'
16294 3' -52.4 NC_004084.1 + 52663 0.73 0.494271
Target:  5'- --gCGAGaCGGAGAUCGUCgUCGAGGCg -3'
miRNA:   3'- cagGUUCaGCUUCUAGCAG-GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 41710 0.72 0.526035
Target:  5'- cGUCCcGGucuUCGAccuucAGAUCGUCCCGGauGACg -3'
miRNA:   3'- -CAGGuUC---AGCU-----UCUAGCAGGGCU--CUG- -5'
16294 3' -52.4 NC_004084.1 + 26437 0.72 0.558538
Target:  5'- aUCCAGGUCGAucacgaGGAcgUCGuUCCCGAG-Cu -3'
miRNA:   3'- cAGGUUCAGCU------UCU--AGC-AGGGCUCuG- -5'
16294 3' -52.4 NC_004084.1 + 31235 0.71 0.602678
Target:  5'- aUUCAGcGUCGc-GAUCGUCCUGAGAUu -3'
miRNA:   3'- cAGGUU-CAGCuuCUAGCAGGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 1894 0.71 0.624939
Target:  5'- -gCCAAGUCGggGAUgGggCCGAccGACa -3'
miRNA:   3'- caGGUUCAGCuuCUAgCagGGCU--CUG- -5'
16294 3' -52.4 NC_004084.1 + 17931 0.7 0.658353
Target:  5'- cUgCAGGUCGAucAGGUCGUCgcguUCGAGGCc -3'
miRNA:   3'- cAgGUUCAGCU--UCUAGCAG----GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 48855 0.7 0.658353
Target:  5'- uUCUucGUgaUGGAGAaCGUCCCGGGGCu -3'
miRNA:   3'- cAGGuuCA--GCUUCUaGCAGGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 18273 0.69 0.702501
Target:  5'- aUCCGAGUgggaacgagaCGGAGAUCacaCCCGAGAa -3'
miRNA:   3'- cAGGUUCA----------GCUUCUAGca-GGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 7470 0.69 0.702501
Target:  5'- cGUCCucGUCGAGGAggagaucagggUCGUCgacgUCGAGGCc -3'
miRNA:   3'- -CAGGuuCAGCUUCU-----------AGCAG----GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 21949 0.69 0.713391
Target:  5'- aGUgCGGGUCG-AGAUC-UCCCG-GACg -3'
miRNA:   3'- -CAgGUUCAGCuUCUAGcAGGGCuCUG- -5'
16294 3' -52.4 NC_004084.1 + 19 0.68 0.756012
Target:  5'- uUCgAAGUCGAGGucguGUCGgccaCCGAGAUg -3'
miRNA:   3'- cAGgUUCAGCUUC----UAGCag--GGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 23357 0.68 0.766372
Target:  5'- uUCCGGGUCGAcgucgacguucGGAUCcGUCgCGAGcCa -3'
miRNA:   3'- cAGGUUCAGCU-----------UCUAG-CAGgGCUCuG- -5'
16294 3' -52.4 NC_004084.1 + 11880 0.68 0.776592
Target:  5'- aUCCGGacGUCGAAGAcuUCGaUgCCGAGAUc -3'
miRNA:   3'- cAGGUU--CAGCUUCU--AGC-AgGGCUCUG- -5'
16294 3' -52.4 NC_004084.1 + 57609 0.67 0.806283
Target:  5'- --aCGGGUUGAGGAguucgcgcuUCGUCUCGAGGu -3'
miRNA:   3'- cagGUUCAGCUUCU---------AGCAGGGCUCUg -5'
16294 3' -52.4 NC_004084.1 + 16678 0.67 0.806283
Target:  5'- -gCCGGcGUCGucccGAUCGUCauCCGGGACg -3'
miRNA:   3'- caGGUU-CAGCuu--CUAGCAG--GGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.