Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 1199 | 0.69 | 0.609017 |
Target: 5'- aCGGCUCGAUCcugaacgcuGGCUgGCUCggCGGCg -3' miRNA: 3'- gGCUGAGCUAG---------UCGA-CGAGagGCUGg -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 2724 | 0.71 | 0.534128 |
Target: 5'- gUGACUCGAcUCAGUgaacGUUgUCCGACUc -3' miRNA: 3'- gGCUGAGCU-AGUCGa---CGAgAGGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 3623 | 0.74 | 0.370322 |
Target: 5'- aCCGACUacgaggCGAUCGGCUGg-CUCaCGAUCg -3' miRNA: 3'- -GGCUGA------GCUAGUCGACgaGAG-GCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 5214 | 0.68 | 0.695511 |
Target: 5'- gCGACUCGA-CGuGCUGCUUccagUCgCGACg -3' miRNA: 3'- gGCUGAGCUaGU-CGACGAG----AG-GCUGg -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 5404 | 0.67 | 0.768213 |
Target: 5'- uCCG-CUCGAUcCAGUaGgUCUCgUGGCCg -3' miRNA: 3'- -GGCuGAGCUA-GUCGaCgAGAG-GCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 6392 | 0.68 | 0.674038 |
Target: 5'- aCCG-CUCGcUCAGcCUGCUCgagGGCCu -3' miRNA: 3'- -GGCuGAGCuAGUC-GACGAGaggCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 7235 | 0.75 | 0.306005 |
Target: 5'- gCCGACcucgaCGAUCGGCgcgUGCUCggCGACCg -3' miRNA: 3'- -GGCUGa----GCUAGUCG---ACGAGagGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 7927 | 0.72 | 0.43372 |
Target: 5'- gUCGAucucCUCGGUCAGUUGCUCgUgCGGCg -3' miRNA: 3'- -GGCU----GAGCUAGUCGACGAG-AgGCUGg -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 8863 | 0.66 | 0.81628 |
Target: 5'- aCCG-CUCGAucUCAGCU-UUCgacacgCCGAUCa -3' miRNA: 3'- -GGCuGAGCU--AGUCGAcGAGa-----GGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 10753 | 0.69 | 0.598195 |
Target: 5'- uCCGGCUCGc-CAGUggggGCgUCgCCGACCu -3' miRNA: 3'- -GGCUGAGCuaGUCGa---CG-AGaGGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 12663 | 0.68 | 0.674038 |
Target: 5'- aUCGGCguccCGAUCgAGCggacugGUUCguagCCGACCa -3' miRNA: 3'- -GGCUGa---GCUAG-UCGa-----CGAGa---GGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 13411 | 0.67 | 0.768213 |
Target: 5'- gCGACUCGAUC-GUUGCg--CCGgaGCUa -3' miRNA: 3'- gGCUGAGCUAGuCGACGagaGGC--UGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 13588 | 0.73 | 0.405772 |
Target: 5'- uCCGAcCUCGGUCAGCUcGauaccgUCaCCGACCg -3' miRNA: 3'- -GGCU-GAGCUAGUCGA-Cg-----AGaGGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 16547 | 0.66 | 0.787923 |
Target: 5'- uUGGCUC--UCAacGCgGCUCUCgGGCCg -3' miRNA: 3'- gGCUGAGcuAGU--CGaCGAGAGgCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 19091 | 0.67 | 0.758148 |
Target: 5'- gUCGACgUCGAUCAGCaccgcgGCggCUaCCGugUg -3' miRNA: 3'- -GGCUG-AGCUAGUCGa-----CGa-GA-GGCugG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 22183 | 0.67 | 0.716745 |
Target: 5'- gUCGACcCGGUaGGCgaGUUCUCCGAgCa -3' miRNA: 3'- -GGCUGaGCUAgUCGa-CGAGAGGCUgG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 23117 | 0.67 | 0.767212 |
Target: 5'- gCCGACgaaCG-UCAGCagGCUCUcgcgcugacuucgCCGACUc -3' miRNA: 3'- -GGCUGa--GCuAGUCGa-CGAGA-------------GGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 23211 | 0.69 | 0.630712 |
Target: 5'- gUCGGCUCGAUCccgacgauucggAGgaGCUCgagCGGCCc -3' miRNA: 3'- -GGCUGAGCUAG------------UCgaCGAGag-GCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 23483 | 0.73 | 0.394914 |
Target: 5'- -gGACUCGAUCAGCgagucguccacaGCUauggaUCCGAUCa -3' miRNA: 3'- ggCUGAGCUAGUCGa-----------CGAg----AGGCUGG- -5' |
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16297 | 3' | -54.6 | NC_004084.1 | + | 26033 | 0.67 | 0.737653 |
Target: 5'- gCgGACUCGAUCgagcggAGCUGCUUgaagagaagCuCGAUCg -3' miRNA: 3'- -GgCUGAGCUAG------UCGACGAGa--------G-GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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